RNA id: TU222746



Basic Information


Item Value
RNA id TU222746
length 6096
lncRNA type read_through
GC content 0.36
exon number 2
gene id G196122
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2637998 ~ 2689802 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTGCAATAATCCACTCAAGGGAAAGGCCATGTGCTTCTATGATTTTTACCACGGCTAAGGGGCTTCACATCATGCCCAAAAACACCCTGTGGTAAAATCACTGTAACACACGGCCTCTTGTGGCTTATTGTTTTAATAGACATCTCCTCTGAAGCTTTCTAGCTCTCAAGATTCATTTCTCCTGAGTAATTCAGAACCACAGTATTCATCAATATTCTTCCTTGCCTCTTGGGCCCTCGCTCACTCTCACTTTCTCATTGAGTAGGCGAAACTCCAGACTGTTTCACATCGCATCATTCTACTTTCTATGCACAACAACGTTTTTGGTGTGGAACGACATGGAACATAAAGAGTGTTTGCATGTTGTGTAACTTTTTAAAACCCCTGAAGCCTAACATCTCCAGAATAGGTAAATATATTTCTGTTGCGCCGTTAATGTTTTTCATCTCAACGAATCAGTCGGTCGCATTTCTTAAATGTCACCATTTTTATTTCCAGCTGAGAAGAGGCATCCCTCCCACAGACGTGGCCATTAGCTCTGCCATACAATCATTTCATCTATATGGGGCTTGAAAAAGAGGTACAACGTGCTGCATCAGCTTAAAGCAATTGTTCATCTCTAATGACTTAGATTTAGAAAACTCGCTGCAATGCTAGCTGAAAGCAGAGAGGATTAATAAAAGCCAATTGCATCTCCAAAACTGGCAGGATGTGATAGCTTATCATCTTGCATGCAATTTCAACTTCCTCTACCGCACAGAGTTTGAAACTATTTGAAAGTCTGCCAATAAACCCCTATGATGGGAGGTGAACTATAATGTGGTAACAATATTACAGACAACGTTTTTTTTATAGCTGATTCAACTTTGTTACATCATAGAGGGTATGCACATGACGTTGTAGTAGACGGGAGTCACTGCGATTATGCCCACACAAAAAAATGTAACCCGTGTAACTCACCCGCAGAGAACAGCTTCATCTGGGCCAGTCCTTCGGGAATTTGCCGCTGGCTCTTATGTAGATAGTGTTTAAACATGAGGAATAATTCCTTTTGGGTATATCAAACGGGCAATCTTTGGTCTTATTAATCTATTACTTGTTCCAGAGCTAATAGATTTGGCTTAAGGGCTATATTAAGTTTCATAACTTCATATTTACATTGAAATTAAATCCTGTACTAACTAGAGTTAGTATGTTTGACTTAACTGTTTGCTTGTGTTTATTTCCTATTTTACTTCTTATACTGTTATAATGGCTATTGTTGTTTAAATATTATTGTTCAATATATGATATATTATATAAATAACATGCCGTATATTTTGGTATTGAGAAAGAGTCTATTAGTGATTTCAGCTTCAGTGAAAGTTACATTAATACGCCATGAGATAGCGGCAAAGACTGTCTTTATGAGTGAGTGAGTCAGTCACAAAGACTTTTATATTGAAATGGACTGAAACAAGGACGTTGTTTTTACTTTAAACATCTTACACGACACGACTAACAAATGCATTGACTAGCGCTGTCATGGAAATGTCTTAAATGTTAAAAGGAAAAGATATCGCTTTCCTCAGCGGACATTCAAACTGATTTTGTGATTATGAATATAAAATTGATCTGAAGAATATCAGCTAGATGCAGGTAATACACTCGCTCAGGCGATCGCTCTCTCATAATACTCTACATATTACAGTGAGTTTCAATGAAGCGACTCAACGTTCCTTCGTTACTAGTTCTAAAGTGACGTTTTAGAATTGGTAACAGAGGTTTGGGCTCAACTGTTAAACTGTCAACTTGACATTTGAATCTGCAGCTAAGGAAGTAGTTCCTCTCAAAAGAGGCTTTTTAAAGACACTCCATTGTTGTTCTTATTTATTTACACACTTGTGCCATCGACTGTTGTATAAAAGCAATATCACACAAGTAGCCGTGCGATATACAGCCATATCGCTCGGCTACTCGTGTGATATTGCTCATATATATATATATATATATCTCATCAGTGTTTCCCACAGGATTTTGTGAGACTGTGGTGGGTGGACAAATCTAAAATTAAGTGACTAGATCAATTAGGAAATTTGTTCTCTTGTAAACAATTTTGCCCCAACTGAGGAGGCATGTCCTGGCGTGAAAGGGACGTCAATGCATACTCTGTTGATGAATTTCGCAATATCGACCCTGCTATTGAACTGAATAAACACTGAACTGACATAAAGTGAATAACAACACCATTGTCTTCTGTAGAGCTGCTTATAGCTAAATTGAACTCATTTCATAATTAATTTATTTTTCACAATTACTGAACTGAACTGAATCAACACTGAACTGACTTGAGCTGAATAATGACACAATTGACAGTAGAGCTGCTTCATAGCAGAATTTAATTCTGTTTGCATCATTGGTCATTATTTTCCTGTTTATCACTGTAAAACTGTTTTGAAAGGTGACTTGACTTGACAATATGAGAAAATTAAAAGAAATATAATCTAGTCTCACGATTAATGCTACTTCACTAAGTTAAGTAAAATTAATAAAGAAAATTAGTAAATTTAACTTGGCCAGTAAAAGTTTGTTGAGTAATTTCTACTTAGTTGAAGTTCACTTTGCAATACTTTTTACTCGAACAATATAACTGAATTAAACCATGTTTTTAAAGTGTATGGTTTACTTAGAATCATCGAAGTAAATAATACAATAGATATTGTGTAGACACCTTATCTACATAATAGAAGTAATGCAGCACTCACCCGAACACAGAGACTTAAATACTTGGTAAACATTAATGACGGTAACATTCAATGGATAATTTTTGTGTATTAATGTGTCATTTTGAGTAGAAAATGAACTCCAGATGTCTACTAAGAAGTTACTAAACATAACAACAAAAGCAATGACAAAAAACAGTGTAAAAACAGCTGGAAAACAGCGAAAAATCAACACTGTTAATTGTTCATGCACCAGTGCATGATGGGAACACCAGTATCAGAAAAGTTGAGAAAACGTTGAAATTTACGCTTTAATTTCTACCAGCTTAAATTGAGTACTAATATAGAGCTTTGTTTGTTTTGTAACTCTTGCCTGAACGTTTTCATGTAAAAATTACATTTGTTTTTTTTCTGTAGTATTTACTTCACCACAGAATCATTTTTATCTCTATACTGTACCTTTTACTCAAAATCGTAACAGTAAACACATTGTTGAATTCAGTATACGGCTTCACCATAATTTAATTCATACATTTTACTTCAAGACAATATTGCACAGTTAAAATCCCCAGTATCTCCTTCTTCTGATACAAACTAACTGAGTACTGCTATATCTTGAGGACACATGAGTGTATCCACACATAAATGTGTATTTACAGAGGTCGCTGAGACATGGCAATGACCTTGTGATTTATTTGAGGTCCTTGGTAAAGTAAACTATATATTCTTTACTAAGTGCATCAATCCTTTTCACCTGTCAGAGAGAGAGGAAGGAGAAACATTTTATCAACAAGCAGTGCTGAGAGTATGTGACCAGTAATGGTTCTTGCAGACGGAACATCATCCTTTTTTTTTTTTTTTTTTTTTTTTGTCAGAAACAACAAAATGCTCTATCAAAACCAACTGTCACAACAGAACATCTCTATCAAAACAGACCAAGAAGTGCATATATGTGTAGACATCCACAATTTACAATATATAGGTAATTTTTTTTAAAGGATTTCTAAGGGTTGTTTTCTTATATCTCTTTTTGTTTGGTTTTAAAAGGAATTGTCGATGAAGCTACTGCACAGTCCCTGTAGCATGTTTCCAGCATGCTTTACTGTTGAGTGTCTAATGACTTGATCCTCAGACTTATTTGAATGGATTACTGTAGTAGATCTGAGATCAGCCTTTAAAACACTTTTTTTTTTTTTTTTTTTTTTTAAACAAAGTCCTTTCTATGGCCATAATTTAGAGTTGATCACAAAGCAAAGCTATAACTCCTATCGCATTGCATTCAGAAATTAATAACACACTTCACAGAGAAAGAAGCCATCCATTGTAGAGCCCGGAGCTCTCACGTGGGCCGGTTCCCCAGCAACAGCCATTTCCAAATGGTCCAAATGAACAGTGCACCGGCGGAAGAGCTGGAGGCATGACATGGCCGAGCAGACAGCCCCATGAACTCTGCTCCTCACTGATGATAACATATTGCCTACAGTTGTGCTCATACTTTACATACCCTTTACAGAGTTTCAGTATTGCCAATAAGTATATTAAGACATTTTATTTTTTACTTGTTAAGTTACAGCCCTGGACAAACCACAGACTCATGCACAGCTAACTCAAAAGACTATAAACTGTCATTGGGGAGCCAACACACAATATTAACACTAGTAATCATACAGTGGTGGTCAGAATTATTGGCACCCTTGGTAAATATGATCAAAAATGACTGTAAAAATAAATCTGCATTGTTTATCCTTTTGATCTTTAATTCGTAAAATTAGCAAAAATCTAACCTTCAATTTAAGGAAAAGAATTGAAAGTGGGGGGAAATCACATTATAAAATAAATGTTTTTCTCCAAAACACGTTGGCCACAATTATTGCCACCCTTAGAATTTTTTATGAGTAAAATATCTCTGAAGTATATTCCCATTCATATTTACATTTTTTTAGCACACCAGGGTGATCATGAACATGAAATTGTCCAGCCATGACTTCCTGTTCCACAGGAGTAAAAACATGAGGAAACACAAAGGACAAATTCCCTTAATCATTCATTACAATGAGAAAAAACAAAGAATATAGTTCTGATGTGCAGCAAAAGATTGTTGAGCTTCACAAAATAGAAAGCGGCTATAAGAAAATAGCTAAAGCATTGAAAATCACCATTTCCACCACCAGGGCAATAATTAAGAAGTTTCAATCAACTAAAGATGTTACAAATCTGCCTGGAAGAGGACGTGTGTCTATATCGTCCTAATGTGCGGTGATGAGGAGAGTTTGAGTGGACAAAGACTCTCCAAGGATCACAGCTGCAGAATTGTAGAAATTAGTTGAGTCTTGAGTCTCAGAAAGCCTAAAAAAAATGATCAAACAGCACCTACATCACCTCAAGTTGTTCGGGAGGGTTTCAAGAAAAATCCTCTGCTCTCATCCAGAAACAATCTCCAGCATATTCAGTTGTCAGACAAGACTGGAACTTCAAAAGGGGCCAGTGTCTATGGTCAGATTAAACTAAAAAAAGAGCTTTTTGGCAGCAAACCCACCAGATGGGTTTGGTGCACACTAGGGATGCACCGATCCGATATTCAGATCGGGTATCGGCTCCGATACTGCCATTTTTGCCGGATCGGGTATCGGCTGGACGGGACCGATCACAATCCGATACTGTGCGTATCAGTATGGCTGTAATACATAGTATGTGTTATTGTTAGGCTCCATAAAAGGCACAAAAACATTAAAAAGCACCAGAAAGTTTCTGTGCACTATATTCCAAGTGTTCTGAAGCCATTCCATAGTTTAATTTGAGGTACAGATAAATATTTAAGTCGTTAAATTAAAGTTCACATAAATGCCTCCCTCCGCTACGGCTGTCAGTCATTCTCAATTCAGCATTCAAACTGCGTGTCGCGTTCGGTTACAACAGTCAACACAATGAAACTCTCTCCAAGATGAATCCATGTTTCTATTATTATACTTCATCTGTAGATAACGATACCGTTAATGCAATACGCATCAATATATCTTCACTTTGTGCTTTGAACTTTTCAATGCGGAGCGCTGCCGCTGCACGCTGTGACTCCATGATGCTTCAAGCGCATCATTCTGCACACAGGATGCGCATAAGCTCTTTGTGCCGCTCTGTATGGGAGCCGTTCATATTATAATACTTTTGCGCAATGAAAGATTGTTAATAGCATTTTTTTTGTTCTGTCCTATCTATCATATGTTGCTGCCTCATTAAAAAAAAACTCCGCTATAAATTTAAAAGAAATGTCTTTTAATTTTATAGTATAGCCTATATTTATATATAAATATATTTATTTTTCAGTTAACGCGACCTTTGAGATTTTATATATATATATATATATATATATATATATATATATATATATATATACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222724 lncRNA upstream 156954 2437850 ~ 2481044 (+) True G196107
TU222728 lncRNA upstream 180718 2439917 ~ 2445456 (+) True G196108
TU222729 lncRNA upstream 180718 2439917 ~ 2440072 (+) True G196108
TU222838 lncRNA upstream 251754 2385750 ~ 2386244 (+) True G196209
TU222806 lncRNA upstream 335920 2301855 ~ 2302078 (+) True G196177
TU223339 lncRNA downstream 75066 2764868 ~ 2765242 (+) True G196687
TU223343 lncRNA downstream 85569 2775371 ~ 2775660 (+) False G196691
TU223345 lncRNA downstream 85583 2775385 ~ 2775660 (+) True G196691
TU223362 lncRNA downstream 102159 2791961 ~ 2792212 (+) True G196703
TU223357 lncRNA downstream 104568 2794370 ~ 2873461 (+) True G196698
CI01000046_02451052_02454565.mRNA mRNA upstream 183327 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02365658_02365816.mRNA mRNA upstream 271812 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02356713_02359204.mRNA mRNA upstream 277989 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02335530_02348525.mRNA mRNA upstream 289053 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02264732_02268319.mRNA mRNA upstream 369360 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02794245_02796188.mRNA mRNA downstream 104077 2793879 ~ 2797088 (+) True CI01000046_02794245_02796188
CI01000046_02868880_02871348.mRNA mRNA downstream 179078 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
CI01000046_02911888_02930362.mRNA mRNA downstream 221343 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_02933552_02949246.mRNA mRNA downstream 243685 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02981176_03006650.mRNA mRNA downstream 291025 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
TU222725 other upstream 180718 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 678850 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 763297 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1074661 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1476308 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 497193 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1254026 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1459621 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1681209 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1725728 4415530 ~ 4421687 (+) True G196869

Expression Profile