RNA id: TU223339


Basic Information

Item Value
RNA id TU223339
length 375
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G196687
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2764868 ~ 2765242 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAGACCACAAGCCGGGACTTGAACTCATGTCGCCCGAAGCATTGTTGCGCTATATGTCAGAGTACTGACTACAAGGCTATGGCTTAGACAATAGGGATTTTATAAAAGCCTTTGTTAAAGAGTTATAAGCCATGAACCAAATACAAACCAGCTACAATCGTGAACCACAACATTAAAGTTTGATTTTAATAAAAAAAAAGTATTGGAAATCAGAAAAAACAAAAAACAAAAAAAAAAACAAAGGTACAAGCCTGTAATTAACAGCTTAAAGGAGAGAAATAACTACAATCTCATGAAGCACTGCCCATGATAGGCCCAAGCCGTTTTAACGCACCTAAACACTACTCAGGCCGATTTTGGGCCCAATTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222747 lncRNA upstream 14902 2649288 ~ 2749966 (+) True G196123
TU222746 lncRNA upstream 75066 2637998 ~ 2689802 (+) True G196122
TU222743 lncRNA upstream 115681 2309820 ~ 2649187 (+) True G196119
TU222724 lncRNA upstream 283824 2437850 ~ 2481044 (+) True G196107
TU222728 lncRNA upstream 307588 2439917 ~ 2445456 (+) True G196108
TU223343 lncRNA downstream 10129 2775371 ~ 2775660 (+) False G196691
TU223345 lncRNA downstream 10143 2775385 ~ 2775660 (+) True G196691
TU223362 lncRNA downstream 26719 2791961 ~ 2792212 (+) True G196703
TU223357 lncRNA downstream 29128 2794370 ~ 2873461 (+) True G196698
TU223403 lncRNA downstream 175906 2941148 ~ 2941489 (+) True G196744
CI01000046_02674254_02676647.mRNA mRNA upstream 88067 2674060 ~ 2676801 (+) True CI01000046_02674254_02676647
CI01000046_02616123_02661535.mRNA mRNA upstream 102904 2616047 ~ 2661964 (+) True CI01000046_02616123_02661535
CI01000046_02451052_02454565.mRNA mRNA upstream 310197 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02365658_02365816.mRNA mRNA upstream 398682 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02356713_02359204.mRNA mRNA upstream 404859 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02794245_02796188.mRNA mRNA downstream 28637 2793879 ~ 2797088 (+) True CI01000046_02794245_02796188
CI01000046_02868880_02871348.mRNA mRNA downstream 103638 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
CI01000046_02911888_02930362.mRNA mRNA downstream 145903 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_02933552_02949246.mRNA mRNA downstream 168245 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02981176_03006650.mRNA mRNA downstream 215585 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
TU222725 other upstream 307588 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 805720 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 890167 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1201531 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1603178 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 421753 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1178586 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1384181 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1605769 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1650288 4415530 ~ 4421687 (+) True G196869

Expression Profile