RNA id: TU223345


Basic Information

Item Value
RNA id TU223345
length 276
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G196691
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2775371 ~ 2775660 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAATTGGCCAGCAAACTCGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAGCAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTAATTCAGGCAAAAGGAGCCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223339 lncRNA upstream 10143 2764868 ~ 2765242 (+) True G196687
TU222747 lncRNA upstream 25419 2649288 ~ 2749966 (+) True G196123
TU222746 lncRNA upstream 85583 2637998 ~ 2689802 (+) True G196122
TU222728 lncRNA upstream 318105 2439917 ~ 2445456 (+) True G196108
TU223362 lncRNA downstream 16301 2791961 ~ 2792212 (+) True G196703
TU223357 lncRNA downstream 18710 2794370 ~ 2873461 (+) True G196698
TU223403 lncRNA downstream 165488 2941148 ~ 2941489 (+) True G196744
TU223408 lncRNA downstream 190528 2966188 ~ 2966536 (+) True G196749
TU223413 lncRNA downstream 205918 2981578 ~ 2981812 (+) True G196754
CI01000046_02674254_02676647.mRNA mRNA upstream 98584 2674060 ~ 2676801 (+) True CI01000046_02674254_02676647
CI01000046_02616123_02661535.mRNA mRNA upstream 113421 2616047 ~ 2661964 (+) True CI01000046_02616123_02661535
CI01000046_02451052_02454565.mRNA mRNA upstream 320714 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02365658_02365816.mRNA mRNA upstream 409199 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02356713_02359204.mRNA mRNA upstream 415376 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02794245_02796188.mRNA mRNA downstream 18219 2793879 ~ 2797088 (+) True CI01000046_02794245_02796188
CI01000046_02868880_02871348.mRNA mRNA downstream 93220 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
CI01000046_02911888_02930362.mRNA mRNA downstream 135485 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_02933552_02949246.mRNA mRNA downstream 157827 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02981176_03006650.mRNA mRNA downstream 205167 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
TU222725 other upstream 318105 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 816237 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 900684 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1212048 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1613695 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 411335 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1168168 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1373763 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1595351 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1639870 4415530 ~ 4421687 (+) True G196869

Expression Profile