Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU223357 |
| length | 1709 |
| lncRNA type | read_through |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G196698 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 2794370 ~ 2873461 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU223362 | lncRNA | upstream | 2158 | 2791961 ~ 2792212 (+) | True | G196703 |
| TU223343 | lncRNA | upstream | 18710 | 2775371 ~ 2775660 (+) | False | G196691 |
| TU223345 | lncRNA | upstream | 18710 | 2775385 ~ 2775660 (+) | True | G196691 |
| TU223339 | lncRNA | upstream | 29128 | 2764868 ~ 2765242 (+) | True | G196687 |
| TU222747 | lncRNA | upstream | 44404 | 2649288 ~ 2749966 (+) | True | G196123 |
| TU223403 | lncRNA | downstream | 67687 | 2941148 ~ 2941489 (+) | True | G196744 |
| TU223408 | lncRNA | downstream | 92727 | 2966188 ~ 2966536 (+) | True | G196749 |
| TU223413 | lncRNA | downstream | 108117 | 2981578 ~ 2981812 (+) | True | G196754 |
| TU223416 | lncRNA | downstream | 116703 | 2990164 ~ 2990436 (+) | True | G196757 |
| TU223432 | lncRNA | downstream | 143004 | 3016465 ~ 3016713 (+) | True | G196773 |
| CI01000046_02674254_02676647.mRNA | mRNA | upstream | 117569 | 2674060 ~ 2676801 (+) | True | CI01000046_02674254_02676647 |
| CI01000046_02616123_02661535.mRNA | mRNA | upstream | 132406 | 2616047 ~ 2661964 (+) | True | CI01000046_02616123_02661535 |
| CI01000046_02451052_02454565.mRNA | mRNA | upstream | 339699 | 2451052 ~ 2454671 (+) | False | CI01000046_02451052_02454565 |
| CI01000046_02365658_02365816.mRNA | mRNA | upstream | 428184 | 2365658 ~ 2366186 (+) | True | CI01000046_02365658_02365816 |
| CI01000046_02356713_02359204.mRNA | mRNA | upstream | 434361 | 2356654 ~ 2360009 (+) | True | CI01000046_02356713_02359204 |
| CI01000046_02911888_02930362.mRNA | mRNA | downstream | 37684 | 2911145 ~ 2930993 (+) | True | CI01000046_02911888_02930362 |
| CI01000046_02933552_02949246.mRNA | mRNA | downstream | 60026 | 2933487 ~ 2949318 (+) | True | CI01000046_02933552_02949246 |
| CI01000046_02981176_03006650.mRNA | mRNA | downstream | 107366 | 2980827 ~ 3006675 (+) | True | CI01000046_02981176_03006650 |
| CI01000046_03041320_03042564.mRNA | mRNA | downstream | 167859 | 3041320 ~ 3042750 (+) | True | CI01000046_03041320_03042564 |
| CI01000046_03046400_03047689.mRNA | mRNA | downstream | 172318 | 3045779 ~ 3048432 (+) | True | CI01000046_03046400_03047689 |
| TU222725 | other | upstream | 337090 | 2439917 ~ 2440072 (+) | False | G196108 |
| TU222567 | other | upstream | 835222 | 1872795 ~ 1959148 (+) | True | G195965 |
| TU222565 | other | upstream | 919669 | 1872795 ~ 1873083 (+) | False | G195965 |
| TU222216 | other | upstream | 1231033 | 1542931 ~ 1563337 (+) | True | G195643 |
| TU221488 | other | upstream | 1632680 | 1161157 ~ 1161690 (+) | True | G195003 |
| TU223597 | other | downstream | 313534 | 3186995 ~ 3194271 (+) | True | G196936 |
| TU223494 | other | downstream | 1070367 | 3943828 ~ 3945500 (+) | True | CI01000046_03943890_03945302 |
| TU223720 | other | downstream | 1275962 | 4149423 ~ 4149780 (+) | True | G197055 |
| TU223789 | other | downstream | 1497550 | 4371011 ~ 4371430 (+) | True | G197121 |
| TU223530 | other | downstream | 1542069 | 4415530 ~ 4421687 (+) | True | G196869 |
