RNA id: TU223439


Basic Information

Item Value
RNA id TU223439
length 235
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G196780
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3023159 ~ 3023393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTCAAATCAGAGATGATTCCTCTAACACACGTGTGGACCATCACTCCAGACATGACACACACAAGCAGAACTTCAGGGCTATTGAATTAAGGCTTGCCGTCTGGCCTGCAGGCTTCAGTGCACAAGGGTCATTATCTCCATGTGGACAGTCACAACATAACAGCTTAGAAGAAATCCAAATACCACCGTGGGACCTTTACGGCTTGTTGGTCACACTGTACTTTAAAACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223432 lncRNA upstream 6446 3016465 ~ 3016713 (+) True G196773
TU223416 lncRNA upstream 32723 2990164 ~ 2990436 (+) True G196757
TU223413 lncRNA upstream 41347 2981578 ~ 2981812 (+) True G196754
TU223408 lncRNA upstream 56623 2966188 ~ 2966536 (+) True G196749
TU223403 lncRNA upstream 81670 2941148 ~ 2941489 (+) True G196744
TU223469 lncRNA downstream 19798 3043191 ~ 3043482 (+) True G196809
TU223443 lncRNA downstream 59540 3082933 ~ 3084120 (+) True G196784
TU223447 lncRNA downstream 100293 3123686 ~ 3123701 (+) True G196787
TU223552 lncRNA downstream 190359 3213752 ~ 3220825 (+) True G196891
TU223637 lncRNA downstream 539104 3562497 ~ 3563548 (+) True G196975
CI01000046_02981176_03006650.mRNA mRNA upstream 16484 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
CI01000046_02933552_02949246.mRNA mRNA upstream 73841 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02911888_02930362.mRNA mRNA upstream 92166 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_02868880_02871348.mRNA mRNA upstream 151548 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
CI01000046_02794245_02796188.mRNA mRNA upstream 226071 2793879 ~ 2797088 (+) True CI01000046_02794245_02796188
CI01000046_03041320_03042564.mRNA mRNA downstream 17927 3041320 ~ 3042750 (+) True CI01000046_03041320_03042564
CI01000046_03046400_03047689.mRNA mRNA downstream 22386 3045779 ~ 3048432 (+) True CI01000046_03046400_03047689
CI01000046_03138487_03139142.mRNA mRNA downstream 115094 3138487 ~ 3139691 (+) False CI01000046_03138487_03139142
CI01000046_03205894_03253907.mRNA mRNA downstream 182199 3205592 ~ 3254330 (+) False CI01000046_03205894_03253907
CI01000046_03347042_03438271.mRNA mRNA downstream 323649 3347042 ~ 3438271 (+) True CI01000046_03347042_03438271
TU222725 other upstream 565879 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 1064011 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 1148458 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1459822 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1861469 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 163602 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 920435 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1126030 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1347618 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1392137 4415530 ~ 4421687 (+) True G196869

Expression Profile