RNA id: TU223469


Basic Information

Item Value
RNA id TU223469
length 292
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G196809
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3043191 ~ 3043482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAATTTAGAATAATTATATATTTTATAAAATATATTACATTTATTTCTGTGATGTCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTGATATGATGATTTGATGCTCAAAAAAACATGTATTATTATCAATGTTGAAAACAGTTTTGCTGCTTCATATTTATGTGTATTTTTTAGGATTCTTTCATGAATAGAAAGCCCAAAAGCATTTATTTGAAATAGAAATATTTTGTAACATTATAAATATCTTGACTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223439 lncRNA upstream 19798 3023159 ~ 3023393 (+) True G196780
TU223432 lncRNA upstream 26478 3016465 ~ 3016713 (+) True G196773
TU223416 lncRNA upstream 52755 2990164 ~ 2990436 (+) True G196757
TU223413 lncRNA upstream 61379 2981578 ~ 2981812 (+) True G196754
TU223408 lncRNA upstream 76655 2966188 ~ 2966536 (+) True G196749
TU223443 lncRNA downstream 39451 3082933 ~ 3084120 (+) True G196784
TU223447 lncRNA downstream 80204 3123686 ~ 3123701 (+) True G196787
TU223552 lncRNA downstream 170270 3213752 ~ 3220825 (+) True G196891
TU223637 lncRNA downstream 519015 3562497 ~ 3563548 (+) True G196975
TU223546 lncRNA downstream 579230 3622712 ~ 3642563 (+) True G196885
CI01000046_03041320_03042564.mRNA mRNA upstream 441 3041320 ~ 3042750 (+) True CI01000046_03041320_03042564
CI01000046_02981176_03006650.mRNA mRNA upstream 36516 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
CI01000046_02933552_02949246.mRNA mRNA upstream 93873 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02911888_02930362.mRNA mRNA upstream 112198 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_02868880_02871348.mRNA mRNA upstream 171580 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
CI01000046_03046400_03047689.mRNA mRNA downstream 2297 3045779 ~ 3048432 (+) True CI01000046_03046400_03047689
CI01000046_03138487_03139142.mRNA mRNA downstream 95005 3138487 ~ 3139691 (+) False CI01000046_03138487_03139142
CI01000046_03205894_03253907.mRNA mRNA downstream 162110 3205592 ~ 3254330 (+) False CI01000046_03205894_03253907
CI01000046_03347042_03438271.mRNA mRNA downstream 303560 3347042 ~ 3438271 (+) True CI01000046_03347042_03438271
CI01000046_03443490_03508344.mRNA mRNA downstream 399795 3443277 ~ 3508481 (+) True CI01000046_03443490_03508344
TU222725 other upstream 585911 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 1084043 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 1168490 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1479854 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1881501 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 143513 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 900346 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1105941 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1327529 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1372048 4415530 ~ 4421687 (+) True G196869

Expression Profile