RNA id: TU223443


Basic Information

Item Value
RNA id TU223443
length 429
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G196784
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3082933 ~ 3084120 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGAAAGTGTGCTGCTTGTCCAGCTTGTAGCCATCAGCGTTTTTGACTGCTTCATGAGCATGACTTGGTGCAGAATACTCCAGGAAAATTTACCCCTTGGTCTTTCCATCTGCGTCTGGGTAGAATTCATTGGTGATTCTGCCAAACTTTGAGAAGATCTTGTGGATGACGTTCTTGAGTTTCTCCAGACGATCTGGTCCGACCTGATCACTGATGTCATCCACGAAATCCTCCGGATCACTGAACGAAGGCTCTTCTCCGTCCTCATACTCCATTTCGGCCTCCATATTCTCCGTATCTCGCATTTAGAGATCGATCGCTGTCAGTATGGGCTAGTGAAAAGGCGGTGGTAAATTTCACAGCAGTAATCCAGAGATTTTTCTCACTCGGCCATGTGCAAAGCAACCGGCGCCAACCACTGCGAGCGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223469 lncRNA upstream 39451 3043191 ~ 3043482 (+) True G196809
TU223439 lncRNA upstream 59540 3023159 ~ 3023393 (+) True G196780
TU223432 lncRNA upstream 66220 3016465 ~ 3016713 (+) True G196773
TU223416 lncRNA upstream 92497 2990164 ~ 2990436 (+) True G196757
TU223413 lncRNA upstream 101121 2981578 ~ 2981812 (+) True G196754
TU223447 lncRNA downstream 39566 3123686 ~ 3123701 (+) True G196787
TU223552 lncRNA downstream 129632 3213752 ~ 3220825 (+) True G196891
TU223637 lncRNA downstream 478377 3562497 ~ 3563548 (+) True G196975
TU223546 lncRNA downstream 538592 3622712 ~ 3642563 (+) True G196885
TU223518 lncRNA downstream 554789 3638909 ~ 3641270 (+) True G196857
CI01000046_03046400_03047689.mRNA mRNA upstream 34501 3045779 ~ 3048432 (+) True CI01000046_03046400_03047689
CI01000046_03041320_03042564.mRNA mRNA upstream 40183 3041320 ~ 3042750 (+) True CI01000046_03041320_03042564
CI01000046_02981176_03006650.mRNA mRNA upstream 76258 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
CI01000046_02933552_02949246.mRNA mRNA upstream 133615 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02911888_02930362.mRNA mRNA upstream 151940 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_03138487_03139142.mRNA mRNA downstream 54367 3138487 ~ 3139691 (+) False CI01000046_03138487_03139142
CI01000046_03205894_03253907.mRNA mRNA downstream 121472 3205592 ~ 3254330 (+) False CI01000046_03205894_03253907
CI01000046_03347042_03438271.mRNA mRNA downstream 262922 3347042 ~ 3438271 (+) True CI01000046_03347042_03438271
CI01000046_03443490_03508344.mRNA mRNA downstream 359157 3443277 ~ 3508481 (+) True CI01000046_03443490_03508344
CI01000046_03511698_03542614.mRNA mRNA downstream 427285 3511405 ~ 3542844 (+) True CI01000046_03511698_03542614
TU222725 other upstream 625653 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 1123785 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 1208232 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1519596 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1921243 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 102875 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 859708 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1065303 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1286891 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1331410 4415530 ~ 4421687 (+) True G196869

Expression Profile