RNA id: TU223597


Basic Information

Item Value
RNA id TU223597
length 337
RNA type TUCP
GC content 0.49
exon number 2
gene id G196936
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3186995 ~ 3194271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGTTACTTTGACACGTACCACCTACCTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTGGCTGTGGCCTCTTTCAGCAGGATAATGCGCCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTAAGGAGCACAACAACGAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATGGAGCATCTGTGGGATGTGCTGAACAAACAAGTCCGATCCATGGAGGCCCCACCTCGCAACTTACAGGACTTAAAGGATCTGCTGCTAACATCTTGGTGCCAGATACCACAACACACCTTCAGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223447 lncRNA upstream 46116 3123686 ~ 3123701 (+) True G196787
TU223443 lncRNA upstream 102875 3082933 ~ 3084120 (+) True G196784
TU223469 lncRNA upstream 143513 3043191 ~ 3043482 (+) True G196809
TU223439 lncRNA upstream 163602 3023159 ~ 3023393 (+) True G196780
TU223432 lncRNA upstream 170282 3016465 ~ 3016713 (+) True G196773
TU223552 lncRNA downstream 19481 3213752 ~ 3220825 (+) True G196891
TU223637 lncRNA downstream 368226 3562497 ~ 3563548 (+) True G196975
TU223546 lncRNA downstream 428441 3622712 ~ 3642563 (+) True G196885
TU223518 lncRNA downstream 444638 3638909 ~ 3641270 (+) True G196857
TU223507 lncRNA downstream 449912 3644183 ~ 3644698 (+) True G196846
CI01000046_03138487_03139142.mRNA mRNA upstream 47304 3138487 ~ 3139691 (+) False CI01000046_03138487_03139142
CI01000046_03046400_03047689.mRNA mRNA upstream 138563 3045779 ~ 3048432 (+) True CI01000046_03046400_03047689
CI01000046_03041320_03042564.mRNA mRNA upstream 144245 3041320 ~ 3042750 (+) True CI01000046_03041320_03042564
CI01000046_02981176_03006650.mRNA mRNA upstream 180320 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
CI01000046_02933552_02949246.mRNA mRNA upstream 237677 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_03205894_03253907.mRNA mRNA downstream 11321 3205592 ~ 3254330 (+) False CI01000046_03205894_03253907
CI01000046_03347042_03438271.mRNA mRNA downstream 152771 3347042 ~ 3438271 (+) True CI01000046_03347042_03438271
CI01000046_03443490_03508344.mRNA mRNA downstream 249006 3443277 ~ 3508481 (+) True CI01000046_03443490_03508344
CI01000046_03511698_03542614.mRNA mRNA downstream 317134 3511405 ~ 3542844 (+) True CI01000046_03511698_03542614
CI01000046_03544999_03551574.mRNA mRNA downstream 350728 3544999 ~ 3551897 (+) True CI01000046_03544999_03551574
TU222725 other upstream 729715 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 1227847 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 1312294 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1623658 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 2025305 1161157 ~ 1161690 (+) True G195003
TU223494 other downstream 749557 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 955152 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1176740 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1221259 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 2080111 5274382 ~ 5276453 (+) True G197352

Expression Profile