RNA id: TU223518


Basic Information

Item Value
RNA id TU223518
length 2272
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G196857
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3638909 ~ 3641270 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCATTTCTATTGCCTGATACTCACCAGTCATTTTCCTGCTCAAAATAGCACACTGAGATCAGACGTGAGCCACTGCCCACAGCAAACTTGTTTTCTTTAGGAGACCATTTCACACAGCGGGCGGCACGGTTGATCCTGAGAATGACCAGGGTGGGCTTCCATACATCTCCCTTTAGGGTCCAGACGTACGCATTACGGTCGGTGCCGCAGGTGACGATGCGATTGCTCTCTGGGGCCCAGTCAATGCCTGTAACCTGGCCATTGTGCTCCTTCAGCACATGGATTTTGTTCCAGTTGTTTCCGTCCTTCTTGTAGATATGGACTTCATGGTTATTAGGACACAGTGCTATTTCTAAAGGAGACAGAAATACAAGACAAAAGTATTTGGGCTTGATGGATTGGATAACAGCCTAAATATTTTATAAGTTAGTACTTGTTTGTTTAAAGTTTATTGGTGGCATCACTATACTGAGGTGTAGGGGTGTTTTAACCTAATTATTAAACTTTGAAATGTAAGGCTTGGATTTTTGACTAACATAAAAAATTTAAAAAATCCTATAATCTATCATTAAAATGGACGACATATAGGGACCAATGGGTGGGCTCTTTTGGAGTGGTGAGAGACCTTAATGTTTAATTCACCTTAATAACTGCATTTCAAAAACTCTCTGGAAACCACCCGCAACACCCTAATATTTAATATATTTACATTTTCAGAAAATGTAAAAGTGTAGTTACAAATTCTAAGGAAATGCATTTAATCCTGCAGACAGAGTGTTTCTGCAGAATATTGTTTAAAAGAAAATGGGCCTATCCTAACTTTGACCACTTGAGAACATATACACGCAACAGGAAGTAAGTGCGCAAGTCTGTCCTAGGTCTGAAAATTGCCAAAGCTCACTGCCCTTGACACACACTACATCCACACGATCACGATAAAAACTTTACTTGTGTTTTTACAACACTATGTTGTAAGTGTGTTCCATCGAGTAATAAGAAGTTTTACACACACTTGCTGTCTTCACGCCATCTTGAACGCTTGGTCCAAATAACAGAAACATGTCATGTCGACAAGCGGCCAAGTTCAAAGACTACAAGTATGGCTATTGGGACAGGCCTGATGCTGGATTCAGACACAGCGTCTGTTTCCTGCCACAGCAGATGTGCTCCCACATTTTTCATAGGTGAGCTAGAAAACATGCATGGTTTTAACAGCAGCAGTTAAACCTAAAAGTCTTTCTCAGCCGTCTCGTTTCCCCGCTGTTGCTCTGCGGTCTGCTGAAGACATACGACATCAGCAACAAAGCACCATTCATGGTAAAACAGGAAGTCTGGGGGGAATTAGTCATTACTGCTTCTCTCATCAGCATGGAAAGAAAAGCAGGGCAGCAGCAGTGAAAAGACACAACTTTGACATTTATATTTCTTGCTTTTTTAAAAAAAAGACAGACTGTTTTTAAACTTAATTAAAACATAAAAGTCCTTATTTGGCTTTTCGAGAGCAGCCACACTTAACTTTTAATGTTGTAGGATTCTAACTGGCATTATAAACCACAGAAAACCATAAAAACAAGTGTGCATGCTGCATGTATGTCCATGTACGTATTTGTACTTTTCCAGAAGGATGTGCAGCTTCTTATCCCAAATGCAGGTCTCAGCAGAATAATGTAAACATTCAGTAAAGGGTCTAATGGGCTCTCAAGAGCGAAATGGTGGTTCACATGATAGTTTACAAAAACAAAAATTCAAGTAATATGGGTAGAAAGACCATCTTTGTGAGGAAATGTTAAACATTAGTTCATGAAAATCAAAGTTCACATCCCATAAGTCTCTTTTCAGAAAAAAATCCTCAAAAAGACATACTTGATTCGTGATCAAATGAGCTTTGGAGACAGAATCATTTGTATATTCAGCAATGATGCTCCCACATGATTACACAGTTCAGAGGCTGAAGGATATCTTTAGCCCTAGAGACTGGGAACAGCTCCAAAGATGCTGCAAAGAGTATGAGAACTTACGAGTTCGGTCCTTGTTCCAGGCATGGCAGCTGATAGGTTCAAGAAGAAAACTGTGATAAGCCATGATTAAGTGCTTTTTCCTGCAAATTAAAATTAGAAGTAATCTTAAGATGAAATGGTAAAAACAATGTTTGAGGTAAACCAAATGACTGGTTACAGCATGACTACATACAGCTCGTTCACTTCCGTAGAGACATATCACTAAAATGGAGAACTTTAGAACTTCCTACTAAAACTTTTGACTTCTATCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223637 lncRNA upstream 75361 3562497 ~ 3563548 (+) True G196975
TU223552 lncRNA upstream 399573 3213752 ~ 3220825 (+) True G196891
TU223447 lncRNA upstream 498030 3123686 ~ 3123701 (+) True G196787
TU223443 lncRNA upstream 554789 3082933 ~ 3084120 (+) True G196784
TU223469 lncRNA upstream 595427 3043191 ~ 3043482 (+) True G196809
TU223507 lncRNA downstream 2913 3644183 ~ 3644698 (+) True G196846
TU223657 lncRNA downstream 130572 3771842 ~ 3772078 (+) True G196994
TU223548 lncRNA downstream 249750 3891020 ~ 3891841 (+) True G196887
TU223688 lncRNA downstream 273314 3914584 ~ 3914837 (+) True G197024
TU223703 lncRNA downstream 309315 3950585 ~ 3950828 (+) True G197039
CI01000046_03624314_03633087.mRNA mRNA upstream 5708 3624314 ~ 3633201 (+) True CI01000046_03624314_03633087
CI01000046_03596032_03605678.mRNA mRNA upstream 33063 3595468 ~ 3605846 (+) True CI01000046_03596032_03605678
CI01000046_03572743_03591418.mRNA mRNA upstream 47456 3570743 ~ 3591453 (+) True CI01000046_03572743_03591418
CI01000046_03556534_03559710.mRNA mRNA upstream 79072 3556206 ~ 3559837 (+) True CI01000046_03556534_03559710
CI01000046_03544999_03551574.mRNA mRNA upstream 87012 3544999 ~ 3551897 (+) True CI01000046_03544999_03551574
CI01000046_03680288_03699097.mRNA mRNA downstream 39018 3680288 ~ 3699097 (+) True CI01000046_03680288_03699097
CI01000046_03712603_03713730.mRNA mRNA downstream 71202 3712472 ~ 3714191 (+) True CI01000046_03712603_03713730
CI01000046_03721265_03754551.mRNA mRNA downstream 79412 3720682 ~ 3754781 (+) True CI01000046_03721265_03754551
CI01000046_03794654_03799486.mRNA mRNA downstream 152450 3793720 ~ 3800026 (+) True CI01000046_03794654_03799486
CI01000046_03887074_03887701.mRNA mRNA downstream 245640 3886910 ~ 3888039 (+) True CI01000046_03887074_03887701
TU223597 other upstream 444638 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1181629 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 1679761 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 1764208 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 2075572 1542931 ~ 1563337 (+) True G195643
TU223494 other downstream 302558 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 508153 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 729741 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 774260 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 1633112 5274382 ~ 5276453 (+) True G197352

Expression Profile