RNA id: TU223703



Basic Information


Item Value
RNA id TU223703
length 244
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G197039
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3950585 ~ 3950828 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTACAACTCCCTAATCTTTTATGGTATTTTAAGGCAGCCCAACTGAAATCAGCATGTGGTTCTCTGGCTCATCTCATATTCCATTGGTTCAGAAAAAAACAAAACAAAACAAAACAAAAAACCCTCAAACAAAATTCATCTAAGACAGAAGATAGCAGACCTTTATGCAGAGAAAACACTGATGTCTTTTGAAACCTTAAGAGAAAGACGCATAATTTCATATGATCTAAGACTCAGTAAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223688 lncRNA upstream 35748 3914584 ~ 3914837 (+) True G197024
TU223548 lncRNA upstream 58744 3891020 ~ 3891841 (+) True G196887
TU223657 lncRNA upstream 178507 3771842 ~ 3772078 (+) True G196994
TU223507 lncRNA upstream 305887 3644183 ~ 3644698 (+) True G196846
TU223546 lncRNA upstream 308022 3622712 ~ 3642563 (+) True G196885
TU223532 lncRNA downstream 175170 4125998 ~ 4126444 (+) True G196871
TU223528 lncRNA downstream 176049 4126877 ~ 4127188 (+) True G196867
TU223715 lncRNA downstream 176785 4127613 ~ 4128009 (+) True G197051
TU223531 lncRNA downstream 177677 4128505 ~ 4128795 (+) True G196870
TU223716 lncRNA downstream 183460 4134288 ~ 4137233 (+) True G197052
CI01000046_03943890_03945302.mRNA mRNA upstream 5213 3943794 ~ 3945372 (+) False CI01000046_03943890_03945302
CI01000046_03887074_03887701.mRNA mRNA upstream 62546 3886910 ~ 3888039 (+) True CI01000046_03887074_03887701
CI01000046_03794654_03799486.mRNA mRNA upstream 150559 3793720 ~ 3800026 (+) True CI01000046_03794654_03799486
CI01000046_03721265_03754551.mRNA mRNA upstream 195804 3720682 ~ 3754781 (+) True CI01000046_03721265_03754551
CI01000046_03712603_03713730.mRNA mRNA upstream 236394 3712472 ~ 3714191 (+) True CI01000046_03712603_03713730
CI01000046_03953528_03957334.mRNA mRNA downstream 2277 3953105 ~ 3957695 (+) True CI01000046_03953528_03957334
CI01000046_03959320_03963204.mRNA mRNA downstream 7720 3958548 ~ 3963204 (+) True CI01000046_03959320_03963204
CI01000046_03964744_03965521.mRNA mRNA downstream 13916 3964744 ~ 3965543 (+) True CI01000046_03964744_03965521
CI01000046_03971520_03980002.mRNA mRNA downstream 20692 3971520 ~ 3980102 (+) True CI01000046_03971520_03980002
CI01000046_03982069_03996142.mRNA mRNA downstream 31241 3982069 ~ 3997163 (+) True CI01000046_03982069_03996142
TU223494 other upstream 5085 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 756314 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1493305 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 1991437 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 2075884 1872795 ~ 1873083 (+) False G195965
TU223720 other downstream 198595 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 420183 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 464702 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 1323554 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1775293 5726121 ~ 5742684 (+) True G197528

Expression Profile