RNA id: TU223528


Basic Information

Item Value
RNA id TU223528
length 312
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G196867
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4126877 ~ 4127188 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGGAGAGCTGCGTATCGATGGTTACGGATCCGTTTCCGGTCTGCTGTGCCAGATGCCCGTCTCTGAATCTCCTTGCAGTAATACTGCGCCCTGCAGTCACTGCTCAGGTGTGAGAAAGCGTCCATGTGCTCTGGCTTCAGATGGGCCTGATAGCGCTCTAGAAAAACCAAGGGCTTGGATTTGTACTGATCCATTAAAACCTTCTTCTTCTCCTCCAGAGTTAAGTCTGGCTCCCCCAGCTGCTGGCTTTTCACTGGACTCCCACTGGCTGCTACAGCCTCGATCATTGCGCTGAGACAGCTGGATGGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223532 lncRNA upstream 433 4125998 ~ 4126444 (+) True G196871
TU223703 lncRNA upstream 176049 3950585 ~ 3950828 (+) True G197039
TU223688 lncRNA upstream 212040 3914584 ~ 3914837 (+) True G197024
TU223548 lncRNA upstream 235036 3891020 ~ 3891841 (+) True G196887
TU223657 lncRNA upstream 354799 3771842 ~ 3772078 (+) True G196994
TU223715 lncRNA downstream 425 4127613 ~ 4128009 (+) True G197051
TU223531 lncRNA downstream 1317 4128505 ~ 4128795 (+) True G196870
TU223716 lncRNA downstream 7100 4134288 ~ 4137233 (+) True G197052
TU223717 lncRNA downstream 11458 4138646 ~ 4139099 (+) True G197053
TU223719 lncRNA downstream 15228 4142416 ~ 4143977 (+) True G197054
CI01000046_04098044_04120141.mRNA mRNA upstream 6525 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 43342 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04040958_04080846.mRNA mRNA upstream 45558 4040023 ~ 4081319 (+) True CI01000046_04040958_04080846
CI01000046_04024795_04028000.mRNA mRNA upstream 98877 4024551 ~ 4028000 (+) True CI01000046_04024795_04028000
CI01000046_03998572_04009276.mRNA mRNA upstream 116661 3998572 ~ 4010216 (+) True CI01000046_03998572_04009276
CI01000046_04274035_04275654.mRNA mRNA downstream 146664 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04308380_04317709.mRNA mRNA downstream 181192 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04319601_04326459.mRNA mRNA downstream 192413 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04478947_04510165.mRNA mRNA downstream 351759 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 405465 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
TU223494 other upstream 181377 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 932606 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1669597 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2167729 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 2252176 1872795 ~ 1873083 (+) False G195965
TU223720 other downstream 22235 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 243823 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 288342 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 1147194 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1598933 5726121 ~ 5742684 (+) True G197528

Expression Profile