RNA id: TU223715


Basic Information

Item Value
RNA id TU223715
length 397
lncRNA type intronic
GC content 0.41
exon number 1
gene id G197051
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4127613 ~ 4128009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATACATTCACCACGTTGTCATTATCATGTGACCTAGTTGCATCACTTCACTGTCATTCACAAATCCTCTCCCGTATCTCATGGGATAGTAAAGTGTCAATTATGTGCACACTCCAGAATCTCGCCGGAAGCAGTAGGTCATCCGGGTACTTTTTGCCTACTCTTTTATGAGTACTGTGAATTTGGACCTACTGCTCATGTCACGTACTGTTTTCTGCCTACTATATAGTAGGAAAGTATGTGATTTCGGATGCAGCCTCAGTTTTGTCCATCGGTTGTTGATTGGACAGAGGCAGATCTGAATGTGAGTTTACAGTTGCTTGTAAGAAAGGGGCAGAGTTTAAGAGGACTAAATGACTGGAGAAATCATTATTTTATTTAGATTAAACATTACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223528 lncRNA upstream 425 4126877 ~ 4127188 (+) True G196867
TU223532 lncRNA upstream 1169 4125998 ~ 4126444 (+) True G196871
TU223703 lncRNA upstream 176785 3950585 ~ 3950828 (+) True G197039
TU223688 lncRNA upstream 212776 3914584 ~ 3914837 (+) True G197024
TU223548 lncRNA upstream 235772 3891020 ~ 3891841 (+) True G196887
TU223531 lncRNA downstream 496 4128505 ~ 4128795 (+) True G196870
TU223716 lncRNA downstream 6279 4134288 ~ 4137233 (+) True G197052
TU223717 lncRNA downstream 10637 4138646 ~ 4139099 (+) True G197053
TU223719 lncRNA downstream 14407 4142416 ~ 4143977 (+) True G197054
TU223721 lncRNA downstream 23714 4151723 ~ 4151967 (+) True G197056
CI01000046_04098044_04120141.mRNA mRNA upstream 7261 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 44078 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04040958_04080846.mRNA mRNA upstream 46294 4040023 ~ 4081319 (+) True CI01000046_04040958_04080846
CI01000046_04024795_04028000.mRNA mRNA upstream 99613 4024551 ~ 4028000 (+) True CI01000046_04024795_04028000
CI01000046_03998572_04009276.mRNA mRNA upstream 117397 3998572 ~ 4010216 (+) True CI01000046_03998572_04009276
CI01000046_04274035_04275654.mRNA mRNA downstream 145843 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04308380_04317709.mRNA mRNA downstream 180371 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04319601_04326459.mRNA mRNA downstream 191592 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04478947_04510165.mRNA mRNA downstream 350938 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 404644 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
TU223494 other upstream 182113 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 933342 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1670333 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2168465 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 2252912 1872795 ~ 1873083 (+) False G195965
TU223720 other downstream 21414 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 243002 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 287521 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 1146373 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1598112 5726121 ~ 5742684 (+) True G197528

Expression Profile