Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU223716 |
| length | 2786 |
| lncRNA type | antisense_over |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G197052 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 4134288 ~ 4137233 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU223531 | lncRNA | upstream | 5493 | 4128505 ~ 4128795 (+) | True | G196870 |
| TU223715 | lncRNA | upstream | 6279 | 4127613 ~ 4128009 (+) | True | G197051 |
| TU223528 | lncRNA | upstream | 7100 | 4126877 ~ 4127188 (+) | True | G196867 |
| TU223532 | lncRNA | upstream | 7844 | 4125998 ~ 4126444 (+) | True | G196871 |
| TU223703 | lncRNA | upstream | 183460 | 3950585 ~ 3950828 (+) | True | G197039 |
| TU223717 | lncRNA | downstream | 1413 | 4138646 ~ 4139099 (+) | True | G197053 |
| TU223719 | lncRNA | downstream | 5183 | 4142416 ~ 4143977 (+) | True | G197054 |
| TU223721 | lncRNA | downstream | 14490 | 4151723 ~ 4151967 (+) | True | G197056 |
| TU223725 | lncRNA | downstream | 24076 | 4161309 ~ 4161513 (+) | True | G197060 |
| TU223726 | lncRNA | downstream | 25354 | 4162587 ~ 4162788 (+) | True | G197061 |
| CI01000046_04098044_04120141.mRNA | mRNA | upstream | 13936 | 4096231 ~ 4120352 (+) | True | CI01000046_04098044_04120141 |
| CI01000046_04081845_04083512.mRNA | mRNA | upstream | 50753 | 4081721 ~ 4083535 (+) | True | CI01000046_04081845_04083512 |
| CI01000046_04040958_04080846.mRNA | mRNA | upstream | 52969 | 4040023 ~ 4081319 (+) | True | CI01000046_04040958_04080846 |
| CI01000046_04024795_04028000.mRNA | mRNA | upstream | 106288 | 4024551 ~ 4028000 (+) | True | CI01000046_04024795_04028000 |
| CI01000046_03998572_04009276.mRNA | mRNA | upstream | 124072 | 3998572 ~ 4010216 (+) | True | CI01000046_03998572_04009276 |
| CI01000046_04274035_04275654.mRNA | mRNA | downstream | 136619 | 4273852 ~ 4275762 (+) | True | CI01000046_04274035_04275654 |
| CI01000046_04308380_04317709.mRNA | mRNA | downstream | 171147 | 4308380 ~ 4317970 (+) | True | CI01000046_04308380_04317709 |
| CI01000046_04319601_04326459.mRNA | mRNA | downstream | 182368 | 4319601 ~ 4326532 (+) | True | CI01000046_04319601_04326459 |
| CI01000046_04478947_04510165.mRNA | mRNA | downstream | 341714 | 4478947 ~ 4511125 (+) | True | CI01000046_04478947_04510165 |
| CI01000046_04532653_04542785.mRNA | mRNA | downstream | 395420 | 4532653 ~ 4542785 (+) | True | CI01000046_04532653_04542785 |
| TU223494 | other | upstream | 188788 | 3943828 ~ 3945500 (+) | True | CI01000046_03943890_03945302 |
| TU223597 | other | upstream | 940017 | 3186995 ~ 3194271 (+) | True | G196936 |
| TU222725 | other | upstream | 1677008 | 2439917 ~ 2440072 (+) | False | G196108 |
| TU222567 | other | upstream | 2175140 | 1872795 ~ 1959148 (+) | True | G195965 |
| TU222565 | other | upstream | 2259587 | 1872795 ~ 1873083 (+) | False | G195965 |
| TU223720 | other | downstream | 12190 | 4149423 ~ 4149780 (+) | True | G197055 |
| TU223789 | other | downstream | 233778 | 4371011 ~ 4371430 (+) | True | G197121 |
| TU223530 | other | downstream | 278297 | 4415530 ~ 4421687 (+) | True | G196869 |
| TU224052 | other | downstream | 1137149 | 5274382 ~ 5276453 (+) | True | G197352 |
| TU224234 | other | downstream | 1588888 | 5726121 ~ 5742684 (+) | True | G197528 |
