RNA id: TU223721


Basic Information

Item Value
RNA id TU223721
length 245
lncRNA type antisense_over
GC content 0.26
exon number 1
gene id G197056
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4151723 ~ 4151967 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAGGGGAGATCACATTGCATATTAGCTACATATTTAGCTGTAAATTTAAATTGAGTTAACATATACTGTATTTTAGATTCAATTTCTATACAATATTTAATTTATATTTTGTATATATGTATAATTTTTATATTTGTATATATAATTTTGTGCACATGCTTAAGAAAGACAAACATAATACTGTAACTGAGCCAGTTGTAATAGAATGGTTTTTTTATACCTCTGCCTGAAACCCCTCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223719 lncRNA upstream 7746 4142416 ~ 4143977 (+) True G197054
TU223717 lncRNA upstream 12624 4138646 ~ 4139099 (+) True G197053
TU223716 lncRNA upstream 14490 4134288 ~ 4137233 (+) True G197052
TU223531 lncRNA upstream 22928 4128505 ~ 4128795 (+) True G196870
TU223715 lncRNA upstream 23714 4127613 ~ 4128009 (+) True G197051
TU223725 lncRNA downstream 9342 4161309 ~ 4161513 (+) True G197060
TU223726 lncRNA downstream 10620 4162587 ~ 4162788 (+) True G197061
TU223723 lncRNA downstream 14156 4166123 ~ 4166464 (+) True G197058
TU223727 lncRNA downstream 16149 4168116 ~ 4168421 (+) True G197062
TU223722 lncRNA downstream 16982 4168949 ~ 4169652 (+) True G197057
CI01000046_04098044_04120141.mRNA mRNA upstream 31371 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 68188 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04040958_04080846.mRNA mRNA upstream 70404 4040023 ~ 4081319 (+) True CI01000046_04040958_04080846
CI01000046_04024795_04028000.mRNA mRNA upstream 123723 4024551 ~ 4028000 (+) True CI01000046_04024795_04028000
CI01000046_03998572_04009276.mRNA mRNA upstream 141507 3998572 ~ 4010216 (+) True CI01000046_03998572_04009276
CI01000046_04274035_04275654.mRNA mRNA downstream 121885 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04308380_04317709.mRNA mRNA downstream 156413 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04319601_04326459.mRNA mRNA downstream 167634 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04478947_04510165.mRNA mRNA downstream 326980 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 380686 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
TU223720 other upstream 1943 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 206223 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 957452 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1694443 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2192575 1872795 ~ 1959148 (+) True G195965
TU223789 other downstream 219044 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 263563 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 1122415 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1574154 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2667971 6819938 ~ 6820389 (+) True G197788

Expression Profile