RNA id: TU223723


Basic Information

Item Value
RNA id TU223723
length 342
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G197058
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4166123 ~ 4166464 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTCAATCCCCATACTCAAGGTGTTGATAAGGATGGCAATCATAATTCCTCGATTAAAGTATTTGCTATCCACTATGCGTGTCAATCGGTCCCGGAAGTCCTCCCAGTACTGAGCCAGGCGGTTACGCTCCTCCAGTATTTTATGATGGGGTGCACGGCTGGGTTTGAACTCTGCTCCATGGGAGAACTCGTACACCACGTCCCCTTCTGATCTGGAGTAGTCTGAATCTCCGAGCTCCAGATCCAAGTTCTCCAGGGCCCTTGTGCAATAGGGGCAACTCAGGAGCTCAAGAAGCAACTGACTGGGCACCACACCAGCTATCTGCAACAGCACACGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223726 lncRNA upstream 3335 4162587 ~ 4162788 (+) True G197061
TU223725 lncRNA upstream 4610 4161309 ~ 4161513 (+) True G197060
TU223721 lncRNA upstream 14156 4151723 ~ 4151967 (+) True G197056
TU223719 lncRNA upstream 22146 4142416 ~ 4143977 (+) True G197054
TU223717 lncRNA upstream 27024 4138646 ~ 4139099 (+) True G197053
TU223727 lncRNA downstream 1652 4168116 ~ 4168421 (+) True G197062
TU223722 lncRNA downstream 2485 4168949 ~ 4169652 (+) True G197057
TU223728 lncRNA downstream 4495 4170959 ~ 4171342 (+) True G197063
TU223729 lncRNA downstream 5923 4172387 ~ 4172634 (+) True G197064
TU223724 lncRNA downstream 6551 4173015 ~ 4173584 (+) True G197059
CI01000046_04098044_04120141.mRNA mRNA upstream 45771 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 82588 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04040958_04080846.mRNA mRNA upstream 84804 4040023 ~ 4081319 (+) True CI01000046_04040958_04080846
CI01000046_04024795_04028000.mRNA mRNA upstream 138123 4024551 ~ 4028000 (+) True CI01000046_04024795_04028000
CI01000046_03998572_04009276.mRNA mRNA upstream 155907 3998572 ~ 4010216 (+) True CI01000046_03998572_04009276
CI01000046_04274035_04275654.mRNA mRNA downstream 107388 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04308380_04317709.mRNA mRNA downstream 141916 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04319601_04326459.mRNA mRNA downstream 153137 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04478947_04510165.mRNA mRNA downstream 312483 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 366189 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
TU223720 other upstream 16343 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 220623 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 971852 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1708843 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2206975 1872795 ~ 1959148 (+) True G195965
TU223789 other downstream 204547 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 249066 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 1107918 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1559657 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2653474 6819938 ~ 6820389 (+) True G197788

Expression Profile