RNA id: TU223553


Basic Information

Item Value
RNA id TU223553
length 291
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G196892
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4334986 ~ 4335276 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCCAGCTCAGATCTGCTGTTGGAGAATGAATGCCTTACCACTTTTCCTAACTACCCAGTATAACTGCCATGTTATAATGGACCTCCAGTGGCAACTTACTCGGCTATCCTCCTGCCCAGCTCTCTGCTGGAGGGGTTGGAGTTGGCCGTGAAGATGACCAGGCCTCCTTTAGCGGCGCTCATGTCCTGTGGTTGTCTGGTGTCTACCTCTAGGGACTCAGGCAGTGGCTCCCTGGGCACCCAGGCACTGCTGAGCCCTTCCTATCAACAGGACCACAGGCACACTGTTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223527 lncRNA upstream 5084 4328877 ~ 4329902 (+) True G196866
TU223540 lncRNA upstream 37004 4297217 ~ 4297982 (+) True G196879
TU223773 lncRNA upstream 41165 4293622 ~ 4293821 (+) True G197107
TU223772 lncRNA upstream 42177 4291747 ~ 4292809 (+) True G197106
TU223522 lncRNA upstream 54759 4277430 ~ 4280227 (+) True G196861
TU223549 lncRNA downstream 8322 4343598 ~ 4343875 (+) True G196888
TU223775 lncRNA downstream 15371 4350647 ~ 4350867 (+) True G197109
TU223495 lncRNA downstream 16210 4351486 ~ 4353234 (+) True G196834
TU223777 lncRNA downstream 21289 4356565 ~ 4356803 (+) True G197111
TU223779 lncRNA downstream 21881 4357157 ~ 4358296 (+) False G197112
CI01000046_04319601_04326459.mRNA mRNA upstream 8454 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04308380_04317709.mRNA mRNA upstream 17016 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04274035_04275654.mRNA mRNA upstream 59224 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04098044_04120141.mRNA mRNA upstream 214634 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 251451 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04478947_04510165.mRNA mRNA downstream 143671 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 197377 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
CI01000046_04545960_04557955.mRNA mRNA downstream 210684 4545960 ~ 4558453 (+) True CI01000046_04545960_04557955
CI01000046_04563154_04565515.mRNA mRNA downstream 227811 4563087 ~ 4565727 (+) True CI01000046_04563154_04565515
CI01000046_04579543_04581492.mRNA mRNA downstream 244005 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
TU223720 other upstream 185206 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 389486 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1140715 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1877706 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2375838 1872795 ~ 1959148 (+) True G195965
TU223789 other downstream 35735 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 80254 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 939106 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1390845 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2484662 6819938 ~ 6820389 (+) True G197788

Expression Profile