Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU223495 |
| length | 1511 |
| lncRNA type | antisense_over |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G196834 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 4351486 ~ 4353234 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU223775 | lncRNA | upstream | 619 | 4350647 ~ 4350867 (+) | True | G197109 |
| TU223549 | lncRNA | upstream | 7611 | 4343598 ~ 4343875 (+) | True | G196888 |
| TU223553 | lncRNA | upstream | 16210 | 4334986 ~ 4335276 (+) | True | G196892 |
| TU223527 | lncRNA | upstream | 21584 | 4328877 ~ 4329902 (+) | True | G196866 |
| TU223540 | lncRNA | upstream | 53504 | 4297217 ~ 4297982 (+) | True | G196879 |
| TU223777 | lncRNA | downstream | 3331 | 4356565 ~ 4356803 (+) | True | G197111 |
| TU223779 | lncRNA | downstream | 3923 | 4357157 ~ 4358296 (+) | False | G197112 |
| TU223780 | lncRNA | downstream | 3992 | 4357226 ~ 4358481 (+) | True | G197112 |
| TU223781 | lncRNA | downstream | 5266 | 4358500 ~ 4358800 (+) | True | G197113 |
| TU223782 | lncRNA | downstream | 6055 | 4359289 ~ 4359687 (+) | True | G197114 |
| CI01000046_04319601_04326459.mRNA | mRNA | upstream | 24954 | 4319601 ~ 4326532 (+) | True | CI01000046_04319601_04326459 |
| CI01000046_04308380_04317709.mRNA | mRNA | upstream | 33516 | 4308380 ~ 4317970 (+) | True | CI01000046_04308380_04317709 |
| CI01000046_04274035_04275654.mRNA | mRNA | upstream | 75724 | 4273852 ~ 4275762 (+) | True | CI01000046_04274035_04275654 |
| CI01000046_04098044_04120141.mRNA | mRNA | upstream | 231134 | 4096231 ~ 4120352 (+) | True | CI01000046_04098044_04120141 |
| CI01000046_04081845_04083512.mRNA | mRNA | upstream | 267951 | 4081721 ~ 4083535 (+) | True | CI01000046_04081845_04083512 |
| CI01000046_04478947_04510165.mRNA | mRNA | downstream | 125713 | 4478947 ~ 4511125 (+) | True | CI01000046_04478947_04510165 |
| CI01000046_04532653_04542785.mRNA | mRNA | downstream | 179419 | 4532653 ~ 4542785 (+) | True | CI01000046_04532653_04542785 |
| CI01000046_04545960_04557955.mRNA | mRNA | downstream | 192726 | 4545960 ~ 4558453 (+) | True | CI01000046_04545960_04557955 |
| CI01000046_04563154_04565515.mRNA | mRNA | downstream | 209853 | 4563087 ~ 4565727 (+) | True | CI01000046_04563154_04565515 |
| CI01000046_04579543_04581492.mRNA | mRNA | downstream | 226047 | 4579281 ~ 4581540 (+) | True | CI01000046_04579543_04581492 |
| TU223720 | other | upstream | 201706 | 4149423 ~ 4149780 (+) | True | G197055 |
| TU223494 | other | upstream | 405986 | 3943828 ~ 3945500 (+) | True | CI01000046_03943890_03945302 |
| TU223597 | other | upstream | 1157215 | 3186995 ~ 3194271 (+) | True | G196936 |
| TU222725 | other | upstream | 1894206 | 2439917 ~ 2440072 (+) | False | G196108 |
| TU222567 | other | upstream | 2392338 | 1872795 ~ 1959148 (+) | True | G195965 |
| TU223789 | other | downstream | 17777 | 4371011 ~ 4371430 (+) | True | G197121 |
| TU223530 | other | downstream | 62296 | 4415530 ~ 4421687 (+) | True | G196869 |
| TU224052 | other | downstream | 921148 | 5274382 ~ 5276453 (+) | True | G197352 |
| TU224234 | other | downstream | 1372887 | 5726121 ~ 5742684 (+) | True | G197528 |
| TU224505 | other | downstream | 2466704 | 6819938 ~ 6820389 (+) | True | G197788 |
