RNA id: TU223777


Basic Information

Item Value
RNA id TU223777
length 239
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G197111
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4356565 ~ 4356803 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGCATGCAGCAAAGAAAGGTTAAAGAGAAAGGCAGTGAGTGGCATGGACAAGGCACATGATTATTAATGTTGTTGCTACATGCATGAATTATAGTATAATGCAATCCCTACTAAATAGTGGTGGTCTATAGATGACTGCATAGTTAATCTTCTGCATGATGCTCTTTAATATTACTCCATGCACTCCTTATAAACCTCCTCAGTCCACGAGATAACTGTCATCAGAAAAGGGATCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223495 lncRNA upstream 3331 4351486 ~ 4353234 (+) True G196834
TU223775 lncRNA upstream 5698 4350647 ~ 4350867 (+) True G197109
TU223549 lncRNA upstream 12690 4343598 ~ 4343875 (+) True G196888
TU223553 lncRNA upstream 21289 4334986 ~ 4335276 (+) True G196892
TU223527 lncRNA upstream 26663 4328877 ~ 4329902 (+) True G196866
TU223779 lncRNA downstream 354 4357157 ~ 4358296 (+) False G197112
TU223780 lncRNA downstream 423 4357226 ~ 4358481 (+) True G197112
TU223781 lncRNA downstream 1697 4358500 ~ 4358800 (+) True G197113
TU223782 lncRNA downstream 2486 4359289 ~ 4359687 (+) True G197114
TU223783 lncRNA downstream 3419 4360222 ~ 4360500 (+) True G197115
CI01000046_04319601_04326459.mRNA mRNA upstream 30033 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04308380_04317709.mRNA mRNA upstream 38595 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04274035_04275654.mRNA mRNA upstream 80803 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04098044_04120141.mRNA mRNA upstream 236213 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 273030 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04478947_04510165.mRNA mRNA downstream 122144 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 175850 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
CI01000046_04545960_04557955.mRNA mRNA downstream 189157 4545960 ~ 4558453 (+) True CI01000046_04545960_04557955
CI01000046_04563154_04565515.mRNA mRNA downstream 206284 4563087 ~ 4565727 (+) True CI01000046_04563154_04565515
CI01000046_04579543_04581492.mRNA mRNA downstream 222478 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
TU223720 other upstream 206785 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 411065 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1162294 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1899285 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2397417 1872795 ~ 1959148 (+) True G195965
TU223789 other downstream 14208 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 58727 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 917579 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1369318 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2463135 6819938 ~ 6820389 (+) True G197788

Expression Profile