Item | Value |
---|---|
RNA id | TU223781 |
length | 301 |
lncRNA type | inter_gene |
GC content | 0.35 |
exon number | 1 |
gene id | G197113 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000046 |
NCBI id | null |
chromosome length | 7063170 |
location | 4358500 ~ 4358800 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU223780 | lncRNA | upstream | 19 | 4357226 ~ 4358481 (+) | True | G197112 |
TU223779 | lncRNA | upstream | 204 | 4357157 ~ 4358296 (+) | False | G197112 |
TU223777 | lncRNA | upstream | 1697 | 4356565 ~ 4356803 (+) | True | G197111 |
TU223495 | lncRNA | upstream | 5266 | 4351486 ~ 4353234 (+) | True | G196834 |
TU223775 | lncRNA | upstream | 7633 | 4350647 ~ 4350867 (+) | True | G197109 |
TU223782 | lncRNA | downstream | 489 | 4359289 ~ 4359687 (+) | True | G197114 |
TU223783 | lncRNA | downstream | 1422 | 4360222 ~ 4360500 (+) | True | G197115 |
TU223787 | lncRNA | downstream | 10156 | 4368956 ~ 4369202 (+) | True | G197119 |
TU223792 | lncRNA | downstream | 15482 | 4374282 ~ 4379788 (+) | True | G197124 |
TU223794 | lncRNA | downstream | 23478 | 4382278 ~ 4382492 (+) | True | G197125 |
CI01000046_04319601_04326459.mRNA | mRNA | upstream | 31968 | 4319601 ~ 4326532 (+) | True | CI01000046_04319601_04326459 |
CI01000046_04308380_04317709.mRNA | mRNA | upstream | 40530 | 4308380 ~ 4317970 (+) | True | CI01000046_04308380_04317709 |
CI01000046_04274035_04275654.mRNA | mRNA | upstream | 82738 | 4273852 ~ 4275762 (+) | True | CI01000046_04274035_04275654 |
CI01000046_04098044_04120141.mRNA | mRNA | upstream | 238148 | 4096231 ~ 4120352 (+) | True | CI01000046_04098044_04120141 |
CI01000046_04081845_04083512.mRNA | mRNA | upstream | 274965 | 4081721 ~ 4083535 (+) | True | CI01000046_04081845_04083512 |
CI01000046_04478947_04510165.mRNA | mRNA | downstream | 120147 | 4478947 ~ 4511125 (+) | True | CI01000046_04478947_04510165 |
CI01000046_04532653_04542785.mRNA | mRNA | downstream | 173853 | 4532653 ~ 4542785 (+) | True | CI01000046_04532653_04542785 |
CI01000046_04545960_04557955.mRNA | mRNA | downstream | 187160 | 4545960 ~ 4558453 (+) | True | CI01000046_04545960_04557955 |
CI01000046_04563154_04565515.mRNA | mRNA | downstream | 204287 | 4563087 ~ 4565727 (+) | True | CI01000046_04563154_04565515 |
CI01000046_04579543_04581492.mRNA | mRNA | downstream | 220481 | 4579281 ~ 4581540 (+) | True | CI01000046_04579543_04581492 |
TU223720 | other | upstream | 208720 | 4149423 ~ 4149780 (+) | True | G197055 |
TU223494 | other | upstream | 413000 | 3943828 ~ 3945500 (+) | True | CI01000046_03943890_03945302 |
TU223597 | other | upstream | 1164229 | 3186995 ~ 3194271 (+) | True | G196936 |
TU222725 | other | upstream | 1901220 | 2439917 ~ 2440072 (+) | False | G196108 |
TU222567 | other | upstream | 2399352 | 1872795 ~ 1959148 (+) | True | G195965 |
TU223789 | other | downstream | 12211 | 4371011 ~ 4371430 (+) | True | G197121 |
TU223530 | other | downstream | 56730 | 4415530 ~ 4421687 (+) | True | G196869 |
TU224052 | other | downstream | 915582 | 5274382 ~ 5276453 (+) | True | G197352 |
TU224234 | other | downstream | 1367321 | 5726121 ~ 5742684 (+) | True | G197528 |
TU224505 | other | downstream | 2461138 | 6819938 ~ 6820389 (+) | True | G197788 |