RNA id: TU223783



Basic Information


Item Value
RNA id TU223783
length 279
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G197115
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4360222 ~ 4360500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTGTAGTTAGTTCTCGTTAAATAATGCATTAACTAATGTTAACAAATCAGACCTTATTATAAAATGTTACCAAGGCAATTAATTGGCCTGCAGTGAGCATATAACACTGATCAAATACTTCAGATATTTTCAAACAATGAAACAATTATTTTTATGATTCCTGAAATTTGTCTCAAGTTGTAAAATTGTGGCAAAAATCATGCAGTGTTTCCAGCTTAAAGGGTTAGTTCACCCAAAAATTAAAATTCTGTCATTAATTACTCACCCTCATATTGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223782 lncRNA upstream 535 4359289 ~ 4359687 (+) True G197114
TU223781 lncRNA upstream 1422 4358500 ~ 4358800 (+) True G197113
TU223780 lncRNA upstream 1741 4357226 ~ 4358481 (+) True G197112
TU223779 lncRNA upstream 1926 4357157 ~ 4358296 (+) False G197112
TU223777 lncRNA upstream 3419 4356565 ~ 4356803 (+) True G197111
TU223787 lncRNA downstream 8456 4368956 ~ 4369202 (+) True G197119
TU223792 lncRNA downstream 13782 4374282 ~ 4379788 (+) True G197124
TU223794 lncRNA downstream 21778 4382278 ~ 4382492 (+) True G197125
TU223800 lncRNA downstream 37018 4397518 ~ 4397830 (+) True G197130
TU223805 lncRNA downstream 52362 4412862 ~ 4413349 (+) True G197135
CI01000046_04319601_04326459.mRNA mRNA upstream 33690 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04308380_04317709.mRNA mRNA upstream 42252 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04274035_04275654.mRNA mRNA upstream 84460 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04098044_04120141.mRNA mRNA upstream 239870 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 276687 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04478947_04510165.mRNA mRNA downstream 118447 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 172153 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
CI01000046_04545960_04557955.mRNA mRNA downstream 185460 4545960 ~ 4558453 (+) True CI01000046_04545960_04557955
CI01000046_04563154_04565515.mRNA mRNA downstream 202587 4563087 ~ 4565727 (+) True CI01000046_04563154_04565515
CI01000046_04579543_04581492.mRNA mRNA downstream 218781 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
TU223720 other upstream 210442 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 414722 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1165951 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1902942 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2401074 1872795 ~ 1959148 (+) True G195965
TU223789 other downstream 10511 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 55030 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 913882 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1365621 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2459438 6819938 ~ 6820389 (+) True G197788

Expression Profile