RNA id: TU223789


Basic Information

Item Value
RNA id TU223789
length 420
RNA type TUCP
GC content 0.47
exon number 1
gene id G197121
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4371011 ~ 4371430 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATGTTTACCATAGCTCTCTCTGTCAGCGACGAGGGATTTACATGTCATAAATGTAGGGAAATAGTCAGGCTGACAGAGAGAATCTCAGAATTAGAGACACGCATCCAAACTTTAATCGAGGATAGTAAGAATGCAAGGGCTTCAGATACTGTTTTGGATGCGACTAGCTTAGTGAACTCTGTACATTGTTCGGTTCCGGCTGTAGAGCCCGCGCAGCAGGGCACTTGGGTAACGGTGAGGCGGCCTAGCCGCGGAAAACACCACTCTTCCATTCCAATAAGAACATCAAACAGGTTCTCCCCACTCAGTGATACACCCACTGAGAATCCTGTTGAAAGTGCCCTAGTTATTGGCGATTCTATTACACGGAACGTGAAAATAGAGACACCAGCCACCATAGTCACATGTTTGCCGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223787 lncRNA upstream 1809 4368956 ~ 4369202 (+) True G197119
TU223783 lncRNA upstream 10511 4360222 ~ 4360500 (+) True G197115
TU223782 lncRNA upstream 11324 4359289 ~ 4359687 (+) True G197114
TU223781 lncRNA upstream 12211 4358500 ~ 4358800 (+) True G197113
TU223780 lncRNA upstream 12530 4357226 ~ 4358481 (+) True G197112
TU223792 lncRNA downstream 2852 4374282 ~ 4379788 (+) True G197124
TU223794 lncRNA downstream 10848 4382278 ~ 4382492 (+) True G197125
TU223800 lncRNA downstream 26088 4397518 ~ 4397830 (+) True G197130
TU223805 lncRNA downstream 41432 4412862 ~ 4413349 (+) True G197135
TU223806 lncRNA downstream 50306 4421736 ~ 4421959 (+) True G197136
CI01000046_04319601_04326459.mRNA mRNA upstream 44479 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04308380_04317709.mRNA mRNA upstream 53041 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04274035_04275654.mRNA mRNA upstream 95249 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04098044_04120141.mRNA mRNA upstream 250659 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 287476 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04478947_04510165.mRNA mRNA downstream 107517 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 161223 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
CI01000046_04545960_04557955.mRNA mRNA downstream 174530 4545960 ~ 4558453 (+) True CI01000046_04545960_04557955
CI01000046_04563154_04565515.mRNA mRNA downstream 191657 4563087 ~ 4565727 (+) True CI01000046_04563154_04565515
CI01000046_04579543_04581492.mRNA mRNA downstream 207851 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
TU223720 other upstream 221231 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 425511 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1176740 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1913731 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 2411863 1872795 ~ 1959148 (+) True G195965
TU223530 other downstream 44100 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 902952 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1354691 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2448508 6819938 ~ 6820389 (+) True G197788

Expression Profile