RNA id: TU223794


Basic Information

Item Value
RNA id TU223794
length 215
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G197125
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4382278 ~ 4382492 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAACTATCACTATAGCATTTACTCTGAGGTAAGACTACAATAGAATTATTTGAGGAAAGACATACAAGAGAATGTGGGAAAACAGAACTTTTGAGCTGAACAGTTGATATGCTTGACAGAGTTCTGAGATTCAAGTTAACATAGGCAAATACTGACATTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223792 lncRNA upstream 2490 4374282 ~ 4379788 (+) True G197124
TU223787 lncRNA upstream 13076 4368956 ~ 4369202 (+) True G197119
TU223783 lncRNA upstream 21778 4360222 ~ 4360500 (+) True G197115
TU223782 lncRNA upstream 22591 4359289 ~ 4359687 (+) True G197114
TU223781 lncRNA upstream 23478 4358500 ~ 4358800 (+) True G197113
TU223800 lncRNA downstream 15026 4397518 ~ 4397830 (+) True G197130
TU223805 lncRNA downstream 30370 4412862 ~ 4413349 (+) True G197135
TU223806 lncRNA downstream 39244 4421736 ~ 4421959 (+) True G197136
TU223810 lncRNA downstream 53386 4435878 ~ 4436252 (+) True G197140
TU223550 lncRNA downstream 54745 4437237 ~ 4443882 (+) True G196889
CI01000046_04319601_04326459.mRNA mRNA upstream 55746 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04308380_04317709.mRNA mRNA upstream 64308 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04274035_04275654.mRNA mRNA upstream 106516 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04098044_04120141.mRNA mRNA upstream 261926 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 298743 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04478947_04510165.mRNA mRNA downstream 96455 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 150161 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
CI01000046_04545960_04557955.mRNA mRNA downstream 163468 4545960 ~ 4558453 (+) True CI01000046_04545960_04557955
CI01000046_04563154_04565515.mRNA mRNA downstream 180595 4563087 ~ 4565727 (+) True CI01000046_04563154_04565515
CI01000046_04579543_04581492.mRNA mRNA downstream 196789 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
TU223789 other upstream 10848 4371011 ~ 4371430 (+) True G197121
TU223720 other upstream 232498 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 436778 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1188007 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1924998 2439917 ~ 2440072 (+) False G196108
TU223530 other downstream 33038 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 891890 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1343629 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2437446 6819938 ~ 6820389 (+) True G197788

Expression Profile