RNA id: TU223805


Basic Information

Item Value
RNA id TU223805
length 488
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G197135
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4412862 ~ 4413349 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGTCGTGAATATGGCTCCCACGGCTCATCCTCCGGACCGCCGGAGGGAGCCATCTCCGGAATATTGACTCTTTGCCATTCGGACTCCATTTCCCATAGGCCCTCATTCCTGGGACTGATTGCACTTTCACCTGCACCACATCACACACACACTATTTAAGACACGCACGCACACCACATCTTTGCGAAGTCTTGATTTGCTACGGTAGTCATTTCTGAGCATTATTTCTGTGGACTGATATCTTGTTATTACCCGGATTGTTTGTTATCTGTGAACCTCTGCCGCCTGCCCTGAACTTTGCTTGTACCCTGGACTGTGATTGTTTGCCGCCTGTCTTGATCTCTGCCTGTGACCCGTCTCTGATTCCTGCTGCCAGCCTCGACCCCTGCCTGTCCCTGACTACGGTATTGCTCTGCCCTTTCCTGTACTGCTGCTGTGTTTAATAAAGCTGCTTATGGATCCACACACTGTTGACCCATCATTACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223800 lncRNA upstream 15032 4397518 ~ 4397830 (+) True G197130
TU223794 lncRNA upstream 30370 4382278 ~ 4382492 (+) True G197125
TU223792 lncRNA upstream 33074 4374282 ~ 4379788 (+) True G197124
TU223787 lncRNA upstream 43660 4368956 ~ 4369202 (+) True G197119
TU223783 lncRNA upstream 52362 4360222 ~ 4360500 (+) True G197115
TU223806 lncRNA downstream 8387 4421736 ~ 4421959 (+) True G197136
TU223810 lncRNA downstream 22529 4435878 ~ 4436252 (+) True G197140
TU223550 lncRNA downstream 23888 4437237 ~ 4443882 (+) True G196889
TU223839 lncRNA downstream 227832 4641181 ~ 4643913 (+) False G197153
TU223838 lncRNA downstream 229964 4643313 ~ 4643913 (+) True G197153
CI01000046_04319601_04326459.mRNA mRNA upstream 86330 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04308380_04317709.mRNA mRNA upstream 94892 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04274035_04275654.mRNA mRNA upstream 137100 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04098044_04120141.mRNA mRNA upstream 292510 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 329327 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04478947_04510165.mRNA mRNA downstream 65598 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 119304 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
CI01000046_04545960_04557955.mRNA mRNA downstream 132611 4545960 ~ 4558453 (+) True CI01000046_04545960_04557955
CI01000046_04563154_04565515.mRNA mRNA downstream 149738 4563087 ~ 4565727 (+) True CI01000046_04563154_04565515
CI01000046_04579543_04581492.mRNA mRNA downstream 165932 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
TU223789 other upstream 41432 4371011 ~ 4371430 (+) True G197121
TU223720 other upstream 263082 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 467362 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1218591 3186995 ~ 3194271 (+) True G196936
TU222725 other upstream 1955582 2439917 ~ 2440072 (+) False G196108
TU223530 other downstream 2181 4415530 ~ 4421687 (+) True G196869
TU224052 other downstream 861033 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1312772 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2406589 6819938 ~ 6820389 (+) True G197788

Expression Profile