RNA id: TU223806


Basic Information

Item Value
RNA id TU223806
length 224
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G197136
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4421736 ~ 4421959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCAGTTTCCTACACGCCCACACACTCTCTCATCACATTTAAATAAGACATGCCTCCCATCTGTAAACTCCACTGTTCATTTGTGTTACTTATTGAGCAACCGGTATGTCTGAAAGTGTGATAAGAGACCTGTTGACGACTCTCAGTCTCACCTGTGCAACTCTGAATTCTGAAACTTGTAAAAAATGTGTTAAAAATAAGGTGTTCGTTTCAAATGGATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223805 lncRNA upstream 8387 4412862 ~ 4413349 (+) True G197135
TU223800 lncRNA upstream 23906 4397518 ~ 4397830 (+) True G197130
TU223794 lncRNA upstream 39244 4382278 ~ 4382492 (+) True G197125
TU223792 lncRNA upstream 41948 4374282 ~ 4379788 (+) True G197124
TU223787 lncRNA upstream 52534 4368956 ~ 4369202 (+) True G197119
TU223810 lncRNA downstream 13919 4435878 ~ 4436252 (+) True G197140
TU223550 lncRNA downstream 15278 4437237 ~ 4443882 (+) True G196889
TU223839 lncRNA downstream 219222 4641181 ~ 4643913 (+) False G197153
TU223838 lncRNA downstream 221354 4643313 ~ 4643913 (+) True G197153
TU223845 lncRNA downstream 226991 4648950 ~ 4708769 (+) True G197158
CI01000046_04319601_04326459.mRNA mRNA upstream 95204 4319601 ~ 4326532 (+) True CI01000046_04319601_04326459
CI01000046_04308380_04317709.mRNA mRNA upstream 103766 4308380 ~ 4317970 (+) True CI01000046_04308380_04317709
CI01000046_04274035_04275654.mRNA mRNA upstream 145974 4273852 ~ 4275762 (+) True CI01000046_04274035_04275654
CI01000046_04098044_04120141.mRNA mRNA upstream 301384 4096231 ~ 4120352 (+) True CI01000046_04098044_04120141
CI01000046_04081845_04083512.mRNA mRNA upstream 338201 4081721 ~ 4083535 (+) True CI01000046_04081845_04083512
CI01000046_04478947_04510165.mRNA mRNA downstream 56988 4478947 ~ 4511125 (+) True CI01000046_04478947_04510165
CI01000046_04532653_04542785.mRNA mRNA downstream 110694 4532653 ~ 4542785 (+) True CI01000046_04532653_04542785
CI01000046_04545960_04557955.mRNA mRNA downstream 124001 4545960 ~ 4558453 (+) True CI01000046_04545960_04557955
CI01000046_04563154_04565515.mRNA mRNA downstream 141128 4563087 ~ 4565727 (+) True CI01000046_04563154_04565515
CI01000046_04579543_04581492.mRNA mRNA downstream 157322 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
TU223530 other upstream 49 4415530 ~ 4421687 (+) True G196869
TU223789 other upstream 50306 4371011 ~ 4371430 (+) True G197121
TU223720 other upstream 271956 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 476236 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1227465 3186995 ~ 3194271 (+) True G196936
TU224052 other downstream 852423 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1304162 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2397979 6819938 ~ 6820389 (+) True G197788

Expression Profile