Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU224234 |
| length | 1010 |
| RNA type | TUCP |
| GC content | 0.49 |
| exon number | 9 |
| gene id | G197528 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 5726121 ~ 5742684 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU224237 | lncRNA | upstream | 6152 | 5716356 ~ 5719969 (+) | True | G197529 |
| TU224119 | lncRNA | upstream | 60769 | 5655579 ~ 5665352 (+) | True | G197417 |
| TU224112 | lncRNA | upstream | 100615 | 5587181 ~ 5625506 (+) | True | G197410 |
| TU224169 | lncRNA | upstream | 334769 | 5391122 ~ 5391352 (+) | True | G197466 |
| TU224101 | lncRNA | upstream | 339405 | 5386470 ~ 5386716 (+) | True | G197399 |
| TU224057 | lncRNA | downstream | 885 | 5743569 ~ 5746418 (+) | True | G197355 |
| TU224079 | lncRNA | downstream | 63802 | 5806486 ~ 5807376 (+) | True | G197377 |
| TU224077 | lncRNA | downstream | 64873 | 5807557 ~ 5808347 (+) | True | CI01000046_05808927_05820706 |
| TU224279 | lncRNA | downstream | 215768 | 5958452 ~ 5960575 (+) | True | G197570 |
| TU224283 | lncRNA | downstream | 250789 | 5993473 ~ 5993694 (+) | True | G197574 |
| CI01000046_05686868_05688748.mRNA | mRNA | upstream | 36741 | 5684538 ~ 5689380 (+) | True | CI01000046_05686868_05688748 |
| CI01000046_05643458_05646109.mRNA | mRNA | upstream | 80005 | 5643458 ~ 5646116 (+) | True | CI01000046_05643458_05646109 |
| CI01000046_05635252_05642052.mRNA | mRNA | upstream | 83829 | 5633771 ~ 5642292 (+) | True | CI01000046_05635252_05642052 |
| CI01000046_05562155_05568637.mRNA | mRNA | upstream | 156658 | 5561957 ~ 5569463 (+) | True | CI01000046_05562155_05568637 |
| CI01000046_05481838_05537970.mRNA | mRNA | upstream | 187970 | 5481838 ~ 5538151 (+) | True | CI01000046_05481838_05537970 |
| CI01000046_05756222_05757145.mRNA | mRNA | downstream | 13346 | 5756030 ~ 5757489 (+) | True | CI01000046_05756222_05757145 |
| CI01000046_05775279_05805016.mRNA | mRNA | downstream | 32595 | 5775279 ~ 5805114 (+) | True | CI01000046_05775279_05805016 |
| CI01000046_05808927_05820706.mRNA | mRNA | downstream | 64936 | 5807620 ~ 5820759 (+) | False | CI01000046_05808927_05820706 |
| CI01000046_05824195_05829999.mRNA | mRNA | downstream | 80931 | 5823615 ~ 5830050 (+) | True | CI01000046_05824195_05829999 |
| CI01000046_05837676_05841480.mRNA | mRNA | downstream | 94992 | 5837676 ~ 5841825 (+) | True | CI01000046_05837676_05841480 |
| TU224052 | other | upstream | 449668 | 5274382 ~ 5276453 (+) | True | G197352 |
| TU223530 | other | upstream | 1304434 | 4415530 ~ 4421687 (+) | True | G196869 |
| TU223789 | other | upstream | 1354691 | 4371011 ~ 4371430 (+) | True | G197121 |
| TU223720 | other | upstream | 1576341 | 4149423 ~ 4149780 (+) | True | G197055 |
| TU223494 | other | upstream | 1780621 | 3943828 ~ 3945500 (+) | True | CI01000046_03943890_03945302 |
| TU224505 | other | downstream | 1077254 | 6819938 ~ 6820389 (+) | True | G197788 |
