RNA id: CI01000047_00160239_00163260.mRNA



Basic Information


Item Value
RNA id CI01000047_00160239_00163260.mRNA
length 2677
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000047_00160239_00163260
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 158824 ~ 163280 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTTTTTTTATGTTAACACTATGCATTTCTACTTGCAGTGGCTACTTTTCTCAAAAGTCAATAGACTTGGGGAAAATTCCAGAGAATGGTATGTGTTGCCAAAAGTGGTCTTTTTTTCTCACATTGATAGGGCTATTGTGGCATCTGACACTCCTCATAGACCCCACCTTGACTCTATGTTTACATGTGCTTCCAACACATATTTCCAAGATCAGCTTGCCACTAAATTTTTTGAGCTTCAGGACAAGCCAGTAGGATCTACGGTGGCTGGTGGTTCTGACCTTCACCTATGGATTCCTATGCTATGCCTGCATGTAAAGACTTCATGGCAGAATTTTGCCCTCAAAGGACCAGGTATGGCCAAAAGGCGTTCCAAGACCTCTCGCACTTTGGCTTCAAAGGCAGAAGCAAAGTCCATTGGAGTGTGGAGTGTACCTGAAGTCAAACAGCCAGTTGCTGCACTGGTGGTGTCACCAGATGAGGCACTGTGGGGGAATGTCCGATGCCCTAGTGTTCAGTGTGGCCGCACAGATTCCTTTCTAACGAAAGCGTATGAGTCAGTTGCCTACATCACTTGGGCTGACAACACTGTCGGCCAATTAATTTGGGCTACTTTTAACTCTTTAAAGTCTGTCATTTTTCGCTGGCCCCCAAGAGGGCACAAAGTCGGAGAGCTTGTTGTGGCTCACTCACAATATCCTCACCTGGTCACTTCCACGGTTTGCATCACTGAGGGCTGTTTATTTACCAGGGGTAGTCAATCAGACTGCAGGAGCTCTGTCCAGGAATTGGATACATCCAAGCGAGTGGAGGCTCCACCTGGATGTAGTGCAGGACATATGGCAGGAGTTCGGTATGGCAGACGTAGATCTATTTGCTTCAGAAAACACAACTCTCTGCCCATTGTGGTTTGCCCAGATGGAAGAGTCCAGTCCATTGGGGCAGGACGCACTGTCACAAGATTAGTCAGATTGTCTTCTGTATGCTTTTCCTCCGATTCATCTGTTGTGGGAGACACTTCACAGCATTGCTCAAGGCTGACACAGGGTACTTGTGATAGCGCCAAAGTGGCTGTCCAAACCACGGTTTCCCTTGCTCCAAACCTTGTTGGTGGGGAGACCAAAGCAGCTTCCTTTCAGGAGGGATCTGCTATCCTAGCTGGACAGTCATATTTGGCATCCAGATCCAGTCCATCTACAGTCACGGGTCTGGCCTCTGGGGCCAACGCTGAAACTTCATCATTCACACTTCTCTTAATGTGAGGGCTGCTTCTACACAAAGGCTTTATACCTATCAATGAAGTCTTTCTGTTTGTAGTGCAAGACACATGATTTTGACCCTGTACAATGTACAGTTTCTGTAGTTTTGAGCATCCTGAAAGGTCTTTTAGACAGCGGCAAATCAGCCTCCATGTTAAAGGTTTATGTGGCAGCCATTTCTGCACATCATTCACCTGTACAAAGTTTTTCTCTGGGCTTCCACAGCTTAGTTTGCAGTTTTTTAAAGGTGCAAGGCACCTCAATCCTGCTCACTTCAATTCTGCTAGTCCCCTCTTTCTCCAGTGTGGAAGTTACCTCTGGTGTTGGAGTCTCTTTGTCAATCTCCTTTTGAACCTTTTGAGGACACAGATCTTAGGTGGAAGTCCTCAAAGGTAGCCTTCCTTCAAGCTGTGGCTTCCACAAAAAGGGTTGGTGAACTTCATGTTCTATCTGTGAGTCAGTCCTGTAGAGATGGAAACCAGAAAGTACTGGTGTTATCCTTTGGCCCAATCCATCTTTCCTCCCTAAGGTGCTACTGCACCAGTTATTAATCAGTCTATTGAACTGTATTCCTTCCAACCAACAGTTCTTGAACAACATTCTCTGCTCTTGTGCCTTGTGTGAGCTTTGAAAATGTATGTAGAAGCTACAGCGCTGATAAGGCAATCAGAGCAGTTGTTTGTCTGTTATAGGGGAGCTAGGAAAGGTGCCCCTCTATCTAAGCAGAGGCTGTCACAATGGGTTGTTGAGGTTATTGCTTTGGCCTACAAGAAGTCTCTGCAACCCGTGCCTGGGACCATGACTTGCCATTCCACTAGGGCTGTTTCCTCTTCATGGGTGGCATTTAACTTACAGGCATCTGTGCGGCAGTGACATGGTCCTCTCCTTGTAAATTTGCGAGATTCTACAACGTCAACGTTGCTGTTTCTCAGGATGTGAGCTTGGCTGTGCTTTGCTACTAATCCTTTTTCTGGCAAGTTATTTTCCTCATGACCCTGTTGGTATGGGTCATCCACTAATATAACATAGTCTCTGGCGGTCAGGAGGAATGAAACAGAATACTGGTTACGCAGGTAACCATGGTTCTATGAATTCCAGATGACCGCCAGAATTCCCTGTCGCTCGGAATGCGAGAGGCGCTTCGAAGTGCGGCGCTAAGCTGCACTGGCTTACATCCCCTCGGATCAGCTCACGTCACTACATGATTTCGTTGGTATATGTTTTTCGACCTGTCTGGCAGGTGCACTAATCCACTAATATGACAATCCGGAATTTACAGAACCACGGCTATGATATGAAACACCTATTATATTGTGTGTTACACCTTAGCATCCATAGGACCAACTACTATCTTTAGTTTACACACTATATGAATTTGCTAAGTAAAATGACTTAACAAAACAAAAACATTTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU227206 lncRNA downstream 37677 78005 ~ 121147 (-) True G200216
TU227238 lncRNA downstream 86716 71907 ~ 72108 (-) True G200247
TU227279 lncRNA upstream 47821 211101 ~ 211368 (-) True G200279
TU227294 lncRNA upstream 96686 259966 ~ 260170 (-) True G200293
TU227299 lncRNA upstream 103900 267180 ~ 267426 (-) True G200298
TU227312 lncRNA upstream 123678 286958 ~ 287477 (-) True G200309
TU227313 lncRNA upstream 124426 287706 ~ 288141 (-) True G200310
CI01000047_00124354_00130228.mRNA mRNA downstream 28438 124003 ~ 130386 (-) True CI01000047_00124354_00130228
CI01000047_00103238_00106878.mRNA mRNA downstream 51796 102352 ~ 107028 (-) True CI01000047_00103238_00106878
CI01000047_00099711_00100984.mRNA mRNA downstream 57840 99652 ~ 100984 (-) True CI01000047_00099711_00100984
CI01000047_00082013_00099032.mRNA mRNA downstream 59618 81600 ~ 99206 (-) True CI01000047_00082013_00099032
CI01000047_00010948_00034205.mRNA mRNA downstream 124328 10633 ~ 34496 (-) True CI01000047_00010948_00034205
CI01000047_00209567_00227765.mRNA mRNA upstream 46217 209497 ~ 227765 (-) True CI01000047_00209567_00227765
CI01000047_00235688_00240415.mRNA mRNA upstream 72236 235516 ~ 240769 (-) True CI01000047_00235688_00240415
CI01000047_00347663_00378777.mRNA mRNA upstream 183453 346733 ~ 378777 (-) True CI01000047_00347663_00378777
CI01000047_00468782_00483200.mRNA mRNA upstream 305128 468408 ~ 483200 (-) True CI01000047_00468782_00483200
CI01000047_00519408_00522108.mRNA mRNA upstream 356009 519289 ~ 522245 (-) False CI01000047_00519408_00522108
TU227300 other upstream 104250 267530 ~ 268035 (-) True G200299
TU227419 other upstream 355828 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227498 other upstream 670661 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1542788 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2969033 3132313 ~ 3133652 (-) False G202733

Expression Profile