RNA id: CI01000047_00620874_00645283.mRNA


Basic Information

Item Value
RNA id CI01000047_00620874_00645283.mRNA
length 2846
RNA type mRNA
GC content 0.51
exon number 21
gene id CI01000047_00620874_00645283
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 620756 ~ 645283 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCAGCTACTCCTCTTTAGCACTCGACTTTGAGAGAGAGCTCAGGATTGGGCCTGTCTACGAGTCACCCAGGATGTCCAGACGCAGTCTCCGTCTGCACACCAACACAAGTCACTATGGAGATGACAGTCTGCTTGACTCGTCACTCCACCACAGCGCCACATTCAGCCGTGATACAACTCTGAAGAGCAGAAGAGCTCATCACTCTGTTTCAGGGTCAACACAGATTGTTCAAACACCGAGATCTGCCTCAACGTCAGTCCTGCAGGCTCATAACAGCACCCTCAACAGCTGTGCGCCCAGTGATGCCTCTCTGCTGTCCTCTCTGCTAGATGAGTCCTCCATACAGGAACACACCCTAGTTGACAGCTTCTGGGGTTTGGATGAAGACTGTGATATCAAAGACCAAACTATCATTGCACACCACAGCACAGTGGAGGCCAAAACACAGACTTCTACAGCACAGAACGGCTACGTCTGCAAAGACTGCACCATCACCTCTCCTTCCAAGAACAACATTTCCCTTCATAATGCTACTGGGCATCAGGTGTCTTTTACAGAGGCAGCCAGCACAGCTTCCTTTCCAAACACTACATTGTACTGCAGGGACAAGAATCGCAGACACAAGCCAGGGTTACTGGGGATGTTGTCTGAGATGTGCCTTCATTACAGCAGGAGAATTGCTGCATTTGTAGTGTACATATGCACACTGCTGATGCAGACGGCTCTACTCAAAGGCATGCTGTTATCAGTGTTGCACTGGTTTGTGCGAGTGTGTAAGGGAGTTGCTCGCTCCACAGCCACTGTGCTGAAGAAGACATTGCATTCTGTGCAGCAGAAGAGAGCCACCAATGGCTGTGCTAACGGAGGCAATGAGAAGTACTACAGCAGTATGAGTGTTAAAGAGGTAGTGCTGCAAAAGGAACGGCCAAAGTTCAGCGGCATACTGTGTAAGTTGTTGGCAGGGCAGTTTGTTCCCCAGCAGTTCCAGCAGTCCCCCTGTTTTGCTCTCAGGAAGTTGTGGGTTGTGTCCTTAAGTGCTGTAACCCCCTTCAATCCCTTTGCTGTTTTTAGGTGGAGTGTCTTTTCTTGTCAGGCTGGTTGTTGCCTCGGAGGACAACCTCAGAAAGCTTCTTGTGGCTTTACAATTTCTTTGCAAACTCTGTGCTACTGGGGGCCCTCCGGACTTTTGGCCATGATGCCTGCTGCTAATGTGATGGATTGGAGGGACACATCCTATCTCACCCCTCCGACCATGGACGACTCGGAGAACGGACAAACTCTTACCGACACAGACTCTCAGAGGCCCTCGGTGCTGTCGATGGCGTCGGTAGAGGCAGAGAGGCTGATACGTTTGGAGGAGAGCTTGTCTCAGCTGTGGGATCGAGTGGCAGGAGGTTTGCTCAGGCAGGAAGAGCAGCACACTGAAGTGCTCAGTCTGTATAACACGCTACATTCTGAGCTTCACAGACACACGGACAGAGAGAGCCTGGGCCAGTGGATAGGAGACCTGCTGGAGGAGAGATTCAGCCTGATGAAGGGAGAGGTGCAGAAAGAGGCCAAGAACACGCAGCAGCGTCAGGAAAAGCATGCAGAAGAGCGTCAGTCAGAGAACACTCGACTCGCTGAAGCTGAGGCTCTGCTCCAGACGTTAGCGCGCAAAACTGAGGAGCTGCAGAGAAAACACGAGCCCGCATTTAGAAAGATTCATGAGGCTGAGGCACCCACCCCTGATCCTCACAGTGAGGAGGATGAAAGCAGTGCCAGTGAGGTTTTGCTGGCAGAGGTGAGGCGGCTAGAGGAGGCTTTGGAGCGCATCAGAGATGATGTGCAGGGGCTGATGGGATGCAGAGACAAATGTGACCAGCTGGCCTCCTTTTCAAGCTCAGTGTCCGAGCAGGTGGAAAGGGAAATCAAGTCTCTGTTTTACGGCAGTGACAGAGCAGAAGAGCTGGAGCTTCCTGAATCTCTCCTGCAGTGGCTCTCTGATCACTTTGTGAGCACCACTGAACTGCAGGCTTCACTCAGCGTGCTGGAGAGCAGCATTCTGGGTAACCTGTCCCTTCAGGTAGAGGAGGGCCAGTCACCTTCTAAAGAGACAATCACCCGGACTGTACTACATGCCACAGGGGAGGCAGGCCTCTCTGAGGAACATGTACAGTTGATTGTCAACAATGCAATGAAGCTCTACTCTGAAGACCGCACTGGTCTGGTGGACTATGCTTTGGAATCTGGAGGTGGCAGCATCATAAGCACTCGTTGTTCAGAGTCCTTCAACACCAAAACGGCACTGCTGAGTCTGTTTGGCCTCCCGCTGTGGTACTTCTCCCAGTCACCACGTGTCGTCATACAGCCAGACGTGCATCCTGGGAACTGCTGGGCATTTAAAGGTTCATATGGTTATCTGGTGATCGGCTTGTCCATGAAGATTGTGCCTACAGCCTTTTCTCTGGATCATGTGCCCAAATCCCTGTCACCCACCGGCAACATTAGCAGTGCCCCTCGAGACTTCAATGTCTATGGTCTTGATGAGCAGCAGGAAGAGGGGCAGTTGCTCGGACAGTTTGTCTACGAAGAAGATGGAGACGCTCTTCAGACCTTCTTGGTCTCTGAGGAGATCACACAAGCTTTTCAGATCATTGAGATGAGAGTGCTGTCTAACTGGGGTCATCCTGAATACACCTGTGTGTATCGTTTCCGGGTGCACGGGAAGGTTGTTGATGAATGACTTGCAAGCACTTGGGACATTATGAACTCCTGACAATTTGTCACTCGTGCACTGGACAAAAAGGAATGGAGTCGGTTGAGAAACAAATAATGTGCCATAGAGCTATACTGGTAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227427 lncRNA downstream 89701 530604 ~ 531055 (-) False G200404
TU227424 lncRNA downstream 89701 530792 ~ 531055 (-) True G200404
TU227425 lncRNA downstream 89755 530604 ~ 531001 (-) False G200404
TU227407 lncRNA downstream 155673 464750 ~ 465083 (-) True G200387
TU227393 lncRNA downstream 157665 461430 ~ 463091 (-) True G200376
TU227466 lncRNA upstream 125220 770503 ~ 770964 (-) True G200440
TU227483 lncRNA upstream 134165 779448 ~ 801732 (-) True G200457
TU227485 lncRNA upstream 135187 780470 ~ 782343 (-) True G200459
TU227488 lncRNA upstream 142091 787374 ~ 787712 (-) True G200462
TU227494 lncRNA upstream 170044 815327 ~ 816315 (-) True G200468
CI01000047_00611745_00618340.mRNA mRNA downstream 2416 610742 ~ 618340 (-) True CI01000047_00611745_00618340
CI01000047_00590846_00598816.mRNA mRNA downstream 21940 590645 ~ 598816 (-) True CI01000047_00590846_00598816
CI01000047_00558772_00579870.mRNA mRNA downstream 40051 558052 ~ 580705 (-) True CI01000047_00558772_00579870
CI01000047_00546330_00551551.mRNA mRNA downstream 69205 545956 ~ 551551 (-) True CI01000047_00546330_00551551
CI01000047_00532901_00545479.mRNA mRNA downstream 75277 531554 ~ 545479 (-) True CI01000047_00532901_00545479
CI01000047_00654212_00689092.mRNA mRNA upstream 8165 653448 ~ 689092 (-) True CI01000047_00654212_00689092
CI01000047_00701972_00715090.mRNA mRNA upstream 56689 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_00884469_00889027.mRNA mRNA upstream 238415 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00892063_00896561.mRNA mRNA upstream 245350 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_01071329_01073839.mRNA mRNA upstream 425019 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
TU227419 other downstream 98514 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 352721 267530 ~ 268035 (-) True G200299
TU227498 other upstream 188658 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1060785 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2487030 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2487030 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 3152520 3985342 ~ 3986402 (-) True G202944

Expression Profile