RNA id: CI01000047_00892063_00896561.mRNA


Basic Information

Item Value
RNA id CI01000047_00892063_00896561.mRNA
length 2018
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000047_00892063_00896561
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 890633 ~ 896561 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCGATGGATGATGTACTGGATTGTCTTTGCCCTGTTTACAGTAGTGGAGACGGTCACAGATCTAACCATAGCCTGGTTTCCCCTCTATTACGAGATCAAGGTTGCGTTTGTGATCTGGCTTCTGTCTCCCTACACGAGAGGAGCTAGTGTCATTTACAGAAAAGCCCTCCATCCTCTGCTTTCCTCCAAAGAAAGGGAAATTGACGACTACATAGTCCAGGCGAAAGAGCGAAGCTACGAGACCATGGTGAACTTTGGCAAGCAGGGCCTGAGCATTGCTGCAACTGCTGCTGTGTCTGCTGCTGTCAAGGCAAGTCAAAGAGCACAACTGCACTGGCACATACTTGCAATACCAGCAATAAATGAAACACTAATGACTTTCATTTGCAAGCAAAGGAATACTGCAGCCCTGCTCTCTCCAGTGCAGGGTCAAGGTGCCATCACAGAGAAGCTCAGGAGTCTCAGCATGCACGACCTTACCCAGATCCCTCAAGATGGCGGGTATTCATCCTACGGCTCCAACCCAGCCAGAAGAGCCATCATGGACCAACCCGATGGAGCTGGTATATCTTACCTTTCAGATTAATTATTAACATGCCATCCTTTGTTTCCTTTCGCACTGCTGTTTCTCTGCTGCGTCCACAACAGAAGGCAGATGCCTTGCTCTGTTTGTTCAGTCACAAACTTAGCAGAGCATTTTTATGAACCTACTTGGTTTCAAACAAGCTTCCAATTAGGGCTGCACAATTAATCAAATTTCTAATCGTGATTACGATGCCTTACGATCATTCAAAGATACGATTGCAACAAAAAATATCCACTTACATTGTTCTGTGTGTTTAAGAGATGTGTTTAGAGCATGTTGTGAGAGGCGAATCACAACTGCTTCAGAGTGTAAAAGGTCTAACCCAGCTCAAAAGGAACTACCAGTGAGGTAAGTGTATGCTGATTGGTTGAACAAACGCGAAACACCAGCACCCGCCATTTTTAAAAAGCTGTGAACACAGCCTATCTATTTAGTCCATGAAATAACTCTACAAACATGGAAAACCGTGATAGGTGGACCTCTCAACCTTACGCTAAGGAGAAAATCCAGCGTGACTTTGAGCAGACCCAGCAAAACATGATTATGTATTACTGCTCAGCTAGCGACATTGGACATCAACCACATGGCTAAAGCTAGTACTTATTCATTTACTGTCTACTTTCTTTGTGTAACAGTTCTATCTAAGAACGTATTGGACAGGACTGTTAAACATATCTTAAATTAATGAAGACGGAGAATGCGAGCGCTGTGTGCTCTGGCTGAGCTGTTCTCAGCGCCATCAAAATAAAAGTCACAAGCAGCACAGTTTGTCACTTCAGAGTTCCTACTGGCGTTGCTAATGCAACCAGGAAAATGGACCTAGGGGAACCACCCTGGTGGCTAAAACTTAAGCCCCTTTTATTATTATTAAGAAACCAAACCAACGTATAGTTGACATTTGAGGCTTAGTGCTATAGAAAAGCAATAAATAATTCTCAGGAAGAGTGTTTTCAGCTTGTTTTTGTTTGTTTTGTTTTTTACATAAAAATACGGCATGCAGTTGCTTCAAACAATGGTATAAAGCTATTCAAAACATCATTCAATGTAATTGTGATAATCTTAATTAATTATCGCAATTTCAAGGGAATAATCGACAGCCCTATTTCCAATGCATTACGACGTCACGTCTAATGATGTCGGACAAATTCAAGTGAGAGGGGATCACATAAATATTTAATCACAATAATTCTTATTTCTCATTATCAGTAAAGATGAAAACACTAGACAGTTATGAAATAACTACTCCATCAGTGAAGGATACATCAATGCCGCCTTCATAAACCAGATGAAACCATCTTAGTAGACAGGATGTTACGCAAACATTGAATTTGAATGTGCTTTGATGTCGCCTTCGAGGTTTCAGACACAGCCTTTGTGTGACACTAAACACAGCTAGCAAGAGCCGGGAAAGCGCCTGTCGCGCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227505 lncRNA downstream 42566 847843 ~ 848067 (-) True G200479
TU227497 lncRNA downstream 56766 833510 ~ 833867 (-) True G200471
TU227496 lncRNA downstream 57176 833186 ~ 833457 (-) True G200470
TU227495 lncRNA downstream 73555 816609 ~ 817078 (-) True G200469
TU227494 lncRNA downstream 74318 815327 ~ 816315 (-) True G200468
TU227639 lncRNA upstream 195323 1091884 ~ 1092263 (-) True G200607
TU227641 lncRNA upstream 201100 1097661 ~ 1097894 (-) True G200609
TU227658 lncRNA upstream 237584 1134145 ~ 1142557 (-) True G200626
TU227685 lncRNA upstream 426936 1323497 ~ 1323757 (-) True G200652
TU227690 lncRNA upstream 430833 1327394 ~ 1327615 (-) True G200657
CI01000047_00884469_00889027.mRNA mRNA downstream 1606 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00701972_00715090.mRNA mRNA downstream 175543 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_00654212_00689092.mRNA mRNA downstream 201541 653448 ~ 689092 (-) True CI01000047_00654212_00689092
CI01000047_00620874_00645283.mRNA mRNA downstream 245350 620756 ~ 645283 (-) True CI01000047_00620874_00645283
CI01000047_00611745_00618340.mRNA mRNA downstream 272293 610742 ~ 618340 (-) True CI01000047_00611745_00618340
CI01000047_01071329_01073839.mRNA mRNA upstream 173741 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_01119401_01120162.mRNA mRNA upstream 222591 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01175229_01292056.mRNA mRNA upstream 278027 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
CI01000047_01337067_01353593.mRNA mRNA upstream 440408 1336969 ~ 1353593 (-) True CI01000047_01337067_01353593
CI01000047_01373782_01374697.mRNA mRNA upstream 477221 1373782 ~ 1374854 (-) True CI01000047_01373782_01374697
TU227498 other downstream 56162 833941 ~ 834471 (-) True G200472
TU227419 other downstream 368391 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 622598 267530 ~ 268035 (-) True G200299
TU227734 other upstream 809507 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2235752 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2235752 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2901242 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 3316848 4214294 ~ 4214430 (-) True G203128

Expression Profile