RNA id: TU227734


Basic Information

Item Value
RNA id TU227734
length 3413
RNA type TUCP
GC content 0.38
exon number 3
gene id CI01000047_01708628_01744282
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1706068 ~ 1744282 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAACAGCGTAGGCCAATACTGAGCCAGCATTCTGACATAGAACCCAGAAGCCTGCACTGTCTATACAACATAAACAGCGTAGGAGACGACAGAAGAAATTGTTTAATGAAGTCGTTATTTTTGTTTTGTTTTTTTCGTGCAAAAGTATTCTCGTCACTTCATAACATTAAGGTTGAACCACTATAGTCACGTTGACTATTTTAACGATGTCTTTACTACTTTTCTGGAACTTGAATGTGGTAATTACGTTGCTTTCTATGGGGGATAACATAAACCTCTCGGATTTCATCAAAAAGAACTTAATTTGTGTTCCGAAGATGAACAAAGGTCTTACGGGTTTGGAACGACATGAGGGTGAGTAATTAATGACAGAAATTTAATTTTGGGTGAACTAACCCTTTAGGTGTACAGTTTGGTAACCTGGTAAACACTGGTAACTATATTTTATGTATTTTGGAATAGAGCACTACCTAAGCAGCAGCAACTACATGGACTGCATCTCGTCAGTGACGGGAACTAACGGCTGTAATCTCAACACATCTTTCAAAGGATCTGATCTGCCTGAGCTCTTCAGTAAACTTGGCCTCGGGAAGTATACAGACGTCTTCCAACAGCAGGAGATTGACCTTCAGACATTCCTCACGCTGACCGATCAAGACCTGAAAGAGCTTGGCATCACTACATTCGGAGCCCGCAGGAAAATGCTGTTGGCCATCTCAGAGCTGAACAAGAACCGAAGGAAGCTCTTTGAGCCGCCCAACATCCGCTCCTCGTTCCTGGAAGGGGGCGCCAGCGGTCGACTGCCACGACAGTTCCACACAGACATTGCCAGTGTGAGCGGGCGCTGGTGAGCCCATGCCAATGCATCAACATAGGCCTGAACTGCACAAATTCCCATTCCCAACCTGACATAAAGTACTGGACCAAAACCCGGACCTTCTGAAACTGTGCCAAATAAACAATGTCCATGGAACAGAGGTTTAGGGTCAAAGAACTGTTGAATATTATATGCAGTATGGTACATTATGCAATATGGTACTCATGTTACAATGAAGGAAATGTTGTGAAGGAACATTGGAGCTCCTGCACTGTCCTTGTATATGGTGCAGGCAGACTTTTATTTATATGCTTGTCTTAGGCTTCGCCATACTAAATCTTTGCACTTTAAAAAATGCTAAATACTTAGTCTATGGACAGATTCGCCTGACTAGATGTGCTTGGATCTTACTTAAAGCACTTAAATGGATATCAAGCCAAAGTGTTCTGCGCAAATTATCCATAAGGGGATCTTATCTCATCCCACAAGGCTGCACCACAGTGAAATCACCAGCCTGTTGTTATTACTGATGGACCTTAGTCAGAGTAGACGGCATTTGACACAAATAGTGTACGTCTATCCCTCACAGGCTTGTTTTCATTCAGGTCAAATTAAATATGACGTCTACCCTAACTAAGGTCCACTGTACATTGTCTATATATATTATTTCTGAACCTATAAGTTGTTTACTCTTAAAGGGATAGTACACAGAAAAAGGAAAATTGTGCCATAATTTCCTGTATGATTTTTGTTCTTCTATGGAACACAAAAGAAGATATTTTAAAGAATGTTTCAGCTGTTTTTGGCCATACAATGATAGTTAATAGAGTGCATTAGTTCTCGCTCATTTTTTCCACAGCGTTGGTTCCAGAAGTATTTTTCCATTCATTTTTGCCATAGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAGAACAATAATGCAAACAGATGCTTCAACAAAATCATATACCATTGGTTAACAGCCTTGGAGCTCACAATAGGTCTATCAAAAAAATTACTTCAAAATTGGAACCAAACTGTTTCACTTTATAGGGTCCAATACAACCTTCATTGTATGGACAAAATATCTTCTTTTGTGTATCTGCAGAAGAAAGAAGTCACAGAGAATTTTAATTTGGATAAGCTATCCCTTTAGCTGTTGGTTTTAGAGGTTAGAGTCGGCCTGTCAGTAGTAGCTCTCTCAATAGTGTCTCTCTTTAGCCTCTGACAGAAGTGCAAATTACACCAGCTCTGTTTCAACCACCTTCCTGAACGCCACAGACCACAAGTCTTCACTGACCGCACTTGGAATTCTTGTCAGAGCTGACCATGGCTTAATCTACGGCTTTTCTCCTGCACGCGACCAAAGTCTGTGCTGCTTTTCTTGAGCTCTAGACTTCCTACATCGTCTAAAGCGGCTTGTTTACTTCTATCTTCTCTCACCATTGTTACGTTATCCCAACGCGCTCGTTGTGTTCTCGTATTCTTCGGATATTTCCAAAGCACGTCTTTCAATTCTGACTATATCTAAAGCTGTGAATGTTGCCAGATGTACTCCAAAGGATTGATACCACCAAGTGCCTTTTGTCTTGCACTGACAACTTTTCCAAAGTAATCGAAGACTATCGATCTCTCAAAGGTACAAATGTTTTACTGGGAAGTACCACTTACAGAGTAATCTCGCAGTGCATTGCTTTATCTTTACATGTACGGTATATATTTAGTACTTCCATTTAGCTCTTAAGTACATTGAATTTGTACCTCACACGTGATAGAGGTACTATTTAAGTTTGTATTTTGCATATTGTCTTATTATGTTTGTTTATAGACTTTATGTAGTTTGCTTTGATAATTTACAGACAGTAGCAATCAACCAGTCAATCAATTTGTGTAATAGTTTATGATGGTTTTTTTTGTTGTTTTTTTTAAATTGAGACTGACAAATGAGTGAAACAATAGCTCTCTGTGTAGCCTAAAAATATTATTAGTAATAATAAAATGCAACAGACTATGCAAAGAATCACTTTGCCATTTTAGGTTTAAATGTTTCTGTTTAAGCACATACGCTTTTGTGGTTTATTGGTTGTTCCTTGTTTTTGTTTTAAAGCGAATTAATTTTATAGACTTTGTTTTCCGTAAATTGCTACTTTGTTATATCTTAGATTAGTGCCTTTTATATGCATCAAATGCTACTTTAGTGAGAGACCGATTGTAATTCATTTGTAGAATTGTTTTGTTCTCTCCCCAAGAGGGAAAAATAAGGGACGTCTAAATGTTCTGACATGGCCTTCATGTGGCCAGCACATTTTTGAGTATCTTTGACCAAAGTCAAATGCGTAACCTCTGGGTTATGAGGTTACAAACATCATGAGTGCACAAATGTACAGAGCAGTGAAGCACATCAACCAGTATTATTCTTCCAAATGTTCATTAATTGGCCAGTGCCTTGGGATTGACTTTTCTGTGAGCTTGGCGCAGATTTTGTAATATACTCCATTGTATTGTTCTATGATGATGGTCATAAATTTGTATAATTGCCATAAGTTTGGTATTGCTGAATGTTCTTGATAAGTTGAAGGTGTTATGAAA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K18756 BICC1, BICC; protein bicaudal C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227897 lncRNA downstream 5827 1699974 ~ 1700241 (-) True G200850
TU227894 lncRNA downstream 10617 1695217 ~ 1695451 (-) True G200847
TU227874 lncRNA downstream 79222 1626621 ~ 1626846 (-) True G200827
TU227748 lncRNA downstream 98615 1606841 ~ 1607453 (-) True G200711
TU227749 lncRNA downstream 99416 1606285 ~ 1606652 (-) True G200712
TU227919 lncRNA upstream 145065 1860582 ~ 1860871 (-) True G200869
TU227930 lncRNA upstream 173240 1888757 ~ 1889106 (-) True G200880
TU227939 lncRNA upstream 208143 1923660 ~ 1923995 (-) True G200889
TU227943 lncRNA upstream 215420 1930937 ~ 1934304 (-) False G200890
TU227944 lncRNA upstream 215420 1930937 ~ 1934351 (-) False G200890
CI01000047_01654684_01688086.mRNA mRNA downstream 17760 1654138 ~ 1688308 (-) True CI01000047_01654684_01688086
CI01000047_01470439_01470729.mRNA mRNA downstream 235274 1470399 ~ 1470794 (-) True CI01000047_01470439_01470729
CI01000047_01404421_01451987.mRNA mRNA downstream 254015 1404371 ~ 1452053 (-) True CI01000047_01404421_01451987
CI01000047_01375108_01392690.mRNA mRNA downstream 313378 1374913 ~ 1392690 (-) True CI01000047_01375108_01392690
CI01000047_01373782_01374697.mRNA mRNA downstream 331214 1373782 ~ 1374854 (-) True CI01000047_01373782_01374697
CI01000047_01813106_01813800.mRNA mRNA upstream 97340 1812857 ~ 1814122 (-) True CI01000047_01813106_01813800
CI01000047_01823330_01823581.mRNA mRNA upstream 107755 1823272 ~ 1823581 (-) True CI01000047_01823330_01823581
CI01000047_01824882_01828103.mRNA mRNA upstream 109365 1824882 ~ 1828952 (-) True CI01000047_01824882_01828103
CI01000047_02317565_02318902.mRNA mRNA upstream 601682 2317199 ~ 2318963 (-) True CI01000047_02317565_02318902
CI01000047_02325268_02476792.mRNA mRNA upstream 609751 2325268 ~ 2476792 (-) True CI01000047_02325268_02476792
TU227498 other downstream 871597 833941 ~ 834471 (-) True G200472
TU227419 other downstream 1183826 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 1438033 267530 ~ 268035 (-) True G200299
TU230047 other upstream 1416796 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 1416796 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2082286 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 2497892 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 2563391 4278908 ~ 4278976 (-) True G203126

Expression Profile