RNA id: CI01000047_02747442_02755248.mRNA


Basic Information

Item Value
RNA id CI01000047_02747442_02755248.mRNA
length 1619
RNA type mRNA
GC content 0.47
exon number 7
gene id CI01000047_02747442_02755248
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2746901 ~ 2755248 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGCGGCTGATAAAGGTTATTTGGGTGCAAGAGGGATGAGTGGACCGACATATGACAGGAAGATACCCGGTATTTCAACCGATCTTTCGGGCTCTATGAGTTGCCATCCGACTTCTAAGGACTCTCCGACTCTTCCAGAGTCATCGGCTACAGATATGGGTTATTACAGCAGCCATCACGAATACTACCAGAGTCCTCCATACCCTCAACAGATGAATTCATATCACCAGTTTAATCTGTCTGGGATGGGGGCATCAGCCGGACCTTACCCCACCAAGACAGAATACCCTTACAGCAATACTTACAGACAATACGGACATTACAACAGAGACCTGCAGACGCCACCGCAAAGCGCAGTCAAAGAGGAACCAGAGACTGAAGTTCGGATGGTAAACGGAAAACCCAAGAAAATCCGCAAGCCGCGCACCATTTACTCGAGTTACCAGCTCGCCGCACTGCAGCGCCGCTTCCAGAAGGCGCAGTATCTAGCGCTGCCGGAGCGAGCTGAACTCGCCGCACAGCTGGGGCTCACACAGACACAGGTCAAAATCTGGTTCCAGAACCGGAGATCCAAGTTCAAGAAACTTTACAAGAACGGCGAGGTTCCGCTGGAGCACAGCCCGAACGCCAGCGACTCCATGGCCTGCAACTCCCCTCCATCGCCGGCTGTTTGGGACAATAGCGCGCACTCTAGCCAGGTATCTGCTATAGGTTGGTGTGTTTATGGTGGTTTGGAGTTTACCAGCATCAGATGTTTTCTGGAAGAATTTAATTCCTGCTATGATCTAGATGGCGTCGTCTTGGGACACATTGCTCACTCAGAGAAACCCAAAAGCTGGAAACCGGGGACGATTTCGGGAACCGCTTTCCTCCTTGTCCTTCGAATCTCCTCCAGGCCTCTAAATCCATTCCGAATTGCACCGAAGATGCGTTTCGATGCGCCACAATTAAAACTCATCAGGCACCTCCAGTGCTGGAAATCTCTTAAACTACTATCAGTCCATCTCATCCCCTTGTACTCCCATCACCCTTTAGTGCTCTCCCAAATCAGCTTCCCACGTAATTGCCCTGTTTGAAAGCCCCTTTTCTCTGCTTGTCCGACTTGAGCACCCATTATTCTAATCTCGAGATGTAAAATTGCCCATAATTTCCCTTGTGAGAGCTTGCTACTTCATTCAAAAACACTTGTCTTCTCTTCCCATGACTGTCATCTGAACGGAGCAACATAAACTCCACAAATCAAACTCAGGGATGGGAGTATATAAAGAGGAGCTGGCTAAAATCATTCCATACTTTTGGAATATTAAGTGCAGAGAGATGGCTTCCATTTACAGAAGTGTGGTGGATTTTTCAGCGTGGTTTGTTACCTGTCGAGAGAAGGTAAGTGAATTTGCGCTGTGTTGCTGAGATGAGCATGGTTTAGTATGTAAATAAGTAAGAAAATAACTGATTGTGGGACTCGTCGCATGTAAATCTCCCCCAGATGTTGCAGAAGCTCATAAATGCCTATTATTGTACTTGATATTAGAGTTTCATGCAGGAAGAATTTTGTCTTTATTGTTTACTTGCATGAGGGGTGCATGTGGCAGGCATTGTTTTAATACTGACTATAATAAA

Function

GO:

id name namespace
GO:0048666 neuron development biological_process

KEGG:

id description
K09315 DLX3; homeobox protein DLX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228179 lncRNA downstream 27393 2719269 ~ 2719508 (-) True G201110
TU228134 lncRNA downstream 127032 2619622 ~ 2619869 (-) True G201065
TU228119 lncRNA downstream 260659 2486012 ~ 2486242 (-) True G201050
TU228106 lncRNA downstream 306755 2439810 ~ 2440146 (-) True G201037
TU228103 lncRNA downstream 378822 2367835 ~ 2368079 (-) True G201034
TU228193 lncRNA upstream 2218 2757466 ~ 2757902 (-) True G201124
TU229995 lncRNA upstream 2850 2758098 ~ 2758353 (-) True G202683
TU230031 lncRNA upstream 112529 2867777 ~ 2868033 (-) True G202719
TU230037 lncRNA upstream 119945 2875193 ~ 2875581 (-) True G202725
TU230043 lncRNA upstream 124049 2879297 ~ 2879687 (-) True G202731
CI01000047_02615438_02617123.mRNA mRNA downstream 129629 2615270 ~ 2617272 (-) True CI01000047_02615438_02617123
CI01000047_02594920_02598778.mRNA mRNA downstream 147947 2594920 ~ 2598954 (-) True CI01000047_02594920_02598778
CI01000047_02575122_02577946.mRNA mRNA downstream 168907 2574405 ~ 2577994 (-) True CI01000047_02575122_02577946
CI01000047_02524134_02533163.mRNA mRNA downstream 213550 2524114 ~ 2533351 (-) True CI01000047_02524134_02533163
CI01000047_02507950_02519956.mRNA mRNA downstream 226702 2507608 ~ 2520199 (-) True CI01000047_02507950_02519956
CI01000047_02826142_02826444.mRNA mRNA upstream 70495 2825743 ~ 2826444 (-) True CI01000047_02826142_02826444
CI01000047_02829408_02858055.mRNA mRNA upstream 73208 2828456 ~ 2858562 (-) True CI01000047_02829408_02858055
CI01000047_02939538_02940848.mRNA mRNA upstream 184245 2939493 ~ 2942418 (-) True CI01000047_02939538_02940848
CI01000047_03002349_03064708.mRNA mRNA upstream 247101 3002349 ~ 3065687 (-) True CI01000047_03002349_03064708
CI01000047_03080182_03082134.mRNA mRNA upstream 324838 3080086 ~ 3082134 (-) True CI01000047_03080182_03082134
TU227734 other downstream 1031384 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 1912430 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2224659 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2478866 267530 ~ 268035 (-) True G200299
TU230047 other upstream 377065 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 377065 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 1042555 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1458161 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1523660 4278908 ~ 4278976 (-) True G203126

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008989 True 1591 mRNA 0.46 3 NC_007123.7 5708400 ~ 5711920 (+)
bowfin (Amia calva) AMCG00016736 True 840 mRNA 0.59 3 CM030122.1 28949450 ~ 28953796 (-)