RNA id: CI01000047_03163127_03175326.mRNA


Basic Information

Item Value
RNA id CI01000047_03163127_03175326.mRNA
length 2183
RNA type mRNA
GC content 0.49
exon number 13
gene id CI01000047_03163127_03175326
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3162866 ~ 3175326 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATGGCACAGCGAGTCTCTGTGAATGATGCTGCTGGATCCAGACGGACTTCCAGAGTTCGTGTAGCGGTTCGGCTGAGGCCCTACATGGACAAGCAGGATGATAAGGGAGAGGGGCCCTGTGTCAGGGGCCTGGGGCCACAAAAGCTGGAGATCATCAACTGGAGGAACGCCACTGAGACCCTTCAATACCAGTTTGACGTGTTTCATGGAGAAGAGACGACGCAGCAGGAGGTTTTTCTGACCTCCGTCAAACCCATCCTCCCCCACATCCTTAATGGTCAGAACGCCAGTGTCTTTGCCTATGGACCCACTGGAGCAGGAAAGACTCACACCATGCTTGGCAGTCAAGAGCAGCCGGGGATCATTCCCAGAGCTGTGAGGGAGGTCTTCAATCTGGTTGGAGCTCAAGAAAAGGGGCAGGATGGTTGGGAATACTCGATTGGGATGTCTTACTTGGAGATCTACAATGAAAAGGTGCTGGACCTGTTGTCCCCAGGTTCCCAGGACCTGCCCATCCGTGAAGACAAGGACAGAAACATCCTCATTCCCGGGCTAACGCACACACCCCTCTCATCCTTTGCCGACTTTGACACTCATTTCATCCCCGCGAGTCTAAACCGCACCACAGCCTCCACTAAACTCAACCAGCGCTCCAGCCGCAGTCACGCTATCCTCCTCATAAAGGTAGTGAAGTCTCAGCGTGGGCCGCCACACAGGCAACAAACAGGAAAGCTGTATTTGGTTGATCTGGCTGGTTCAGAGGACAACCGACGTACAGGAAACCAGGGCATTCGTCTGAAAGAGAGTGGAGCCATCAACCTGTCCCTCTTCACCCTCAGTAAAGTGGTGGACGCTCTGAACGCAGGGGCCGGGGGCCGCGTGCCCTACAGGGACAGTAAACTCACCCGTCTGCTGCAGGACTCTCTAGGTGGTTCCGCCCATTCTGTCATGATCACCAACATCGCACCGGAGTACAGATACTACTTTGACACCTTCTCAGCCCTTAACTTTGCCGCCAAGTCTAAGCAGATTGTCAATCGACCCTTTGTCAGGGAAACAGTTGTGGCCCCTACAATTGTTCCTGGAAAGAGATCCAGAGAGGAACAGGAGGCTGGAGGTTCTGGTGAGCCCCAGAACAAGAGGTCTAAGGAGGGGAAGAAAGCTGAACAGTGCCCATCACTACCCGGACATCCACATGGTTCACCAGATTCATCAGTTCTGGAGAGGCTCCTGGCCCTGGAGAAGATGATGATGGGCTCAGCTGAGAGAGAGAGACTTAACCTGCTCAAAACTGTGGCACAGTCCCGGAAAGAAATTCAGATGTTGAAGGAGAAACAGAAGGAGCTGGAAGACAAAGCAAATATGCTTAACAAACAGAGTGAAGCCACTGAGAAAGAGTCCAAAGATGCACTTCTCTTTAAGTCAGATCTGCCCCCATTGCACAGAAAACAGTCTACAGCTGCCAAACCACGCAAACAGCAGGCCGTTGTCACACCGCTACAGGACACTAGCCGTGGAATGGGGAAAAAGGTGCAGCCGTTGCAGCAGTGTGCTGTGGTGGTTAAACCCTCACAATGCTTGGATAAGAAGAAACGGGTCAAAACTGAGGTGGGTGAGGGTAAGGAAAATGGAGGTGTGGATCCACCCTCTGCTCAAGACGTCAACTGGGAGTCCCATTTGGATTCAGCGTTACTAGAGCAGTCCAGGAAGAAAATCCTGCAGACACTGAACTCTGGCTCTCTGAAGGAGCTCAAGAGCCTGCAGCTGATCGGAGACAAGAAAGCCAAACTAATCATGGGCTGGAGAGAGATTCATGGGGATTTCACAGAGGTGGAAGACCTGAAGAAAATCGAAGGCATTACAGCTAAACGTTTCTCTTCTTTTATAAAGGCGAATATTCTCAGCAGTATGGGAAAGTGAAGCATTTGAGCCATGATGTCTGAAGAGGAGCGTTTTAACACTTGTGCTTTGAGCGTTTGTGTTTTTAATGTTTTTACACCCATTTTATGCGTGTAACGTTGTGTACAGTTTTTTTTTCTAAGTGTACATGCTTGTGTATACTTGACTGCTATTTTCCATGTTTTCTATCATTCCTGCATACTTATGCCAATTTTCCCTTTTAGTATTTAACTTTTTTTCTTTTTTGAAATGAACCTAATTTTTCATATGGCACTAAATAAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K10403 KIF22; kinesin family member 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230049 lncRNA downstream 29214 3132313 ~ 3133652 (-) False G202733
TU230051 lncRNA downstream 29214 3132313 ~ 3133652 (-) False G202733
TU230082 lncRNA downstream 48888 3113282 ~ 3113978 (-) True G202757
TU230131 lncRNA downstream 62746 3097841 ~ 3100120 (-) True G202792
TU230080 lncRNA downstream 74166 3077993 ~ 3088700 (-) True G202755
TU230194 lncRNA upstream 156840 3332166 ~ 3334561 (-) True G202847
TU230191 lncRNA upstream 157524 3332850 ~ 3432629 (-) True G202844
TU230189 lncRNA upstream 224523 3399849 ~ 3407492 (-) True G202842
TU230218 lncRNA upstream 265501 3440827 ~ 3445116 (-) True G202869
TU230220 lncRNA upstream 269889 3445215 ~ 3445658 (-) True G202870
CI01000047_03149971_03159412.mRNA mRNA downstream 3454 3149960 ~ 3159412 (-) True CI01000047_03149971_03159412
CI01000047_03136341_03145907.mRNA mRNA downstream 16959 3135912 ~ 3145907 (-) True CI01000047_03136341_03145907
CI01000047_03115498_03127047.mRNA mRNA downstream 34761 3115187 ~ 3128105 (-) True CI01000047_03115498_03127047
CI01000047_03087382_03094014.mRNA mRNA downstream 66849 3087080 ~ 3096017 (-) True CI01000047_03087382_03094014
CI01000047_03085017_03085558.mRNA mRNA downstream 77175 3084995 ~ 3085691 (-) True CI01000047_03085017_03085558
CI01000047_03177108_03216092.mRNA mRNA upstream 1757 3177083 ~ 3216132 (-) True CI01000047_03177108_03216092
CI01000047_03223945_03241971.mRNA mRNA upstream 48297 3223623 ~ 3242716 (-) True CI01000047_03223945_03241971
CI01000047_03258353_03261127.mRNA mRNA upstream 83027 3258353 ~ 3261825 (-) True CI01000047_03258353_03261127
CI01000047_03271413_03302291.mRNA mRNA upstream 94589 3269915 ~ 3302371 (-) True CI01000047_03271413_03302291
CI01000047_03321589_03328761.mRNA mRNA upstream 144366 3319692 ~ 3328761 (-) True CI01000047_03321589_03328761
TU230047 other downstream 29214 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 29214 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 1447349 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2328395 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2640624 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 622477 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1038083 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1103582 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 1399009 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1699053 4874379 ~ 4876734 (-) True G203286

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008971 True 2287 mRNA 0.48 13 NC_007123.7 5048074 ~ 5071836 (+)