RNA id: CI01000047_03514753_03523245.mRNA


Basic Information

Item Value
RNA id CI01000047_03514753_03523245.mRNA
length 1790
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000047_03514753_03523245
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3514451 ~ 3523245 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAGAAAGAATAAAGTGCGGGATTATGTGTCCGACTCGGATTCAGACTACGATGAGTCCTGTAACCCAGACGTCATTTTGAGACAGGCTCTGGCTACAGTTTTGGTCAGGTTCCTCCAGACTGAACCGCAAGGGCGTGTGCTGAAAGTATGTCTGAGATCCTTACGAATCCTCTCAAGAGACAAAAAGGTTATGGGACCTCTGGTCACTGACAGAGCGCTGCTCACTCTAGCCCACCTGGGCGGCATCAGCAATGCACCTATTCCAATAGAAGACACTGACAATGATGTTGACCCCTATAATGACGTCATCGTGGCTATTTCTGAGATCAAATTAGGCCAAGCAGATGAGGATGATCACGGTGGTGAGGAAGACGATGGTTCTGAGGCTGTAACCAGTGATGCGAACGACCCTGTGGTCTGGGGGCCAAGCGATTGGTGTGGTGATCGCAAGGCTAGCACATTTTCAAGCATGAGCCTCGGACCTTCTCGCAGGAGGAGCAGCGTTTTTAAAGCTCTCACACCTGTGCTGGAGAAGTGTTTATCAGTACAGTGGAAGGAACAGTTCAAGGTTGTGCTGGATCCTGCAGCGCCTTTTATAAGTGTGGAAGACTCACAGCAGGCTCAGGAGGCTCTGAAGATCCTTTTTAATATCACACACAGCACACACACTCAAGAACCTGAAGAGGAAGATGCATCTCTCTATCGCCACCTGGCTGCAGTTTTGCGTCACTGTCTGATGGTGTCCTCTGAGGAGGAGGAAGCTACAGATGAATTAAAGGGGCATGCAGCGAACATGCTGTCTGCTCTCCCGTTGAGTTGTCTAGACGTTCTGGTATCCGTGCCTCTGGGTCCAGACTCACACCAGATGAATGGAGTCAACATGGACTGTGTGCACGACCTACTCATGTACATGGAGAGAAAACTGGAGCAGATTCTGCCTCCATTAAAGGATGCTAGCACTAAACCTGAAAAGGGCAACACCTTGAGGAATCGTCTGGTTAGACTGATGACCCACCTGGACACTGAGCTCAAACACTGCGCTGCTGACCTGCTCTTCGTGCTGTGCAAAGAAAATGTGAGTCGTTTCGTCAAGTACACTGGATATGGGAATGCTGCTGGGCTCCTGGCCACTAGAGGCTTGCTGGGAGGTCAAAGGTCACAGGCCTCATCATCAGGAGCACAGTACTCTAGCGATTCAGACTCCGACACCGAGGAGTACCGGCAGATTAAAGACAAAGTGAACCCAGTGACGGGACAGGTGGAAGAGGAGCAGCCTGACCCCATGGAGGGAATGACGGAGGAGGAGAAAGAGGAGGAAGCTCATCGGCTCATCAGTCTTTTTAACAAACTCTCAAAGGATAATATGATTCAGCCAATGGGATTGAACCAAGAGGGTCAGCTGGTGCCAATGTCAGAGCTCAAGGACCTCTCAATGGAGGAGAGGGAATCTGAGGAAGAAAATGATGACCTGGAGAATGTGGAGTAGAATCGACATAGATGTGGTGAACTTTTAAGGTGATGTAGTTACACACTACTACATGTACTTACTATAGTGATAACAGTAAATTATGCATAACTAACCCTTAAAAAAACCCTAACCATAACTCTATAGTAAGTACATGTAGTTAATTAATATTACTTAGTACTTATTTGAGTAATTACAATGTAACTACGTCACCTTAAAATAAAGTGTAAACATGTATTTTGATATTATAATATCTAGTCTTAACAGTTTGACAGCTTATGTCTAAAAACAACCTTAAATAATACCTGAATATGTCTAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230185 lncRNA downstream 5343 3506921 ~ 3509108 (-) True G202840
TU230238 lncRNA downstream 42744 3471487 ~ 3471707 (-) True G202880
TU230230 lncRNA downstream 55611 3454530 ~ 3458840 (-) True G202877
TU230220 lncRNA downstream 68793 3445215 ~ 3445658 (-) True G202870
TU230218 lncRNA downstream 69335 3440827 ~ 3445116 (-) True G202869
TU230252 lncRNA upstream 17146 3540391 ~ 3596078 (-) False G202894
TU230255 lncRNA upstream 18989 3542234 ~ 3551219 (-) True G202894
TU230288 lncRNA upstream 77095 3600340 ~ 3602562 (-) True G202911
TU230265 lncRNA upstream 94224 3617469 ~ 3618413 (-) False G202900
TU230266 lncRNA upstream 102081 3625326 ~ 3625869 (-) True G202900
CI01000047_03412414_03435209.mRNA mRNA downstream 78268 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03321589_03328761.mRNA mRNA downstream 185690 3319692 ~ 3328761 (-) True CI01000047_03321589_03328761
CI01000047_03271413_03302291.mRNA mRNA downstream 212080 3269915 ~ 3302371 (-) True CI01000047_03271413_03302291
CI01000047_03258353_03261127.mRNA mRNA downstream 252626 3258353 ~ 3261825 (-) True CI01000047_03258353_03261127
CI01000047_03223945_03241971.mRNA mRNA downstream 271735 3223623 ~ 3242716 (-) True CI01000047_03223945_03241971
CI01000047_03689400_03699969.mRNA mRNA upstream 166155 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03713156_03716003.mRNA mRNA upstream 189911 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03741720_03750331.mRNA mRNA upstream 217825 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03785018_03800982.mRNA mRNA upstream 261497 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03855710_03868781.mRNA mRNA upstream 332298 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
TU230047 other downstream 380799 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 380799 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 1798934 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2679980 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2992209 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 274558 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 690164 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 755663 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 1051090 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1351134 4874379 ~ 4876734 (-) True G203286

Expression Profile