RNA id: CI01000047_03730436_03739299.mRNA



Basic Information


Item Value
RNA id CI01000047_03730436_03739299.mRNA
length 1307
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000047_03730436_03739299
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3730243 ~ 3739573 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATATATAGGCCTAATTAATGTTGAATTGTAACCTCGTTGTTTTGATTTCTGTTGGGCGCCATTCAGGGTTATGGATGGGCGAGGCTCAAGGTAAGATAAATTGACCTAATTTGTACTAGAGTGGTTTTGTGAGAGGAAAGCAAACAAGTCACCAGAATCATGTCTCTGTCTCAGAATGTGGTCGACCAATAATGACGAACAGGATTGTTGGAGGTTCTTCTGCGTCAGAAGGCGCTTGGCCTTGGCAGGTGGATATTCAGTCTGACAGTCAAGGACATGTGTGTGGAGGAACTGTCATCTCGGAGAGCTGGGTCTTGTCTGCTGCACACTGTTTTCCCAACCCTAACGACATCTCCTCCTACATCATTTACGCGGGCCGACAGCAGCTGAATGGCTGGAATCCGGACCAGACGAGCCATAGGATCCGTCACGTGGTGGTTCCACTGGGTTACACAGACCCTCAGTTGGGTCAGGATATTGCTCTAGTAGAGCTAGCCACACCTATTGTGTGGTCTGACCGCATTCAGCCTGTCTGCTTGCCAAATGCCAATGCGGAGTTTAACAGCGACATGAAGTGCATGATCACTGGATGGGGTAACATCAGAGATGGAGTTGCTCTACAGGGGGTTGGGCCATTGCAGGAAGTCCAAGTGCCAATCATTGACTCCAAGACTTGTCAGGATATGTTTCTGATAAACCCCACAGAGAATATTGACATCCGCTTTGACATGATGTGTGCTGGCTACCAAGAAGGGGGCAAAGACTCCTGCCAGGGTGACTCCGGTGGCCCTCTGGTGTGTCAGATCAGTGATGGTAGTTGGGTGCAAGCTGGAATTGTGAGCTTCGGTCTCGGCTGCGCTAAAGCAAACCGCCCAGGAGTCTATGCCAAAGTGTCCAGCTTTAGTAACTTCATCCAAAACCATGTTGGAGGAGTCCAGCTCAAGAGCGCATCGAGTCACAACTGGGCTGACCGGGTCATGGTGCTCATCAGGACTCTAACTCTGCTGGTATTGGTACAGCTGCTGAGATAGACGCACAGAGAAGCAGAAAGCCCACCCCAAAATACCGTCCTACATAAACAGGGATTATAATGCCATAAGAGGCTTTTTAATCATTTTTTAAACAACTTTATATTATGTAGTTTCCTACTTTGTTTGTACCAAAGTTACACAAACAGACACAAGACACATGAATGATATCACTTGATTGTTATAATCATCTTTTAACTATCTGAAATTTGTGCAAGTGTAATGATTAAAAATGCAATTTTTTTCAACTGGAACAACTCGTCCACATAATGACATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU228583 lncRNA upstream 10469 3715514 ~ 3719774 (+) True G201428
TU228534 lncRNA upstream 33893 3693528 ~ 3696350 (+) True G201386
TU228513 lncRNA upstream 41725 3687525 ~ 3688518 (+) True G201379
TU228512 lncRNA upstream 42937 3685788 ~ 3687306 (+) True G201378
TU228551 lncRNA upstream 104388 3624039 ~ 3625855 (+) True G201402
TU228617 lncRNA downstream 1480 3741053 ~ 3741866 (+) True G201461
TU228618 lncRNA downstream 16893 3756466 ~ 3756675 (+) True G201462
TU228634 lncRNA downstream 54713 3794286 ~ 3794790 (+) True G201475
TU228600 lncRNA downstream 145482 3885055 ~ 3915947 (+) True G201444
TU228594 lncRNA downstream 153230 3892803 ~ 3921072 (+) True G201439
CI01000047_03617666_03660217.mRNA mRNA upstream 69921 3617604 ~ 3660322 (+) False CI01000047_03617666_03660217
CI01000047_03540545_03612052.mRNA mRNA upstream 118133 3540545 ~ 3612110 (+) True CI01000047_03540545_03612052
CI01000047_03533847_03535991.mRNA mRNA upstream 193997 3533446 ~ 3536246 (+) True CI01000047_03533847_03535991
CI01000047_03501347_03512538.mRNA mRNA upstream 217385 3501347 ~ 3512858 (+) True CI01000047_03501347_03512538
CI01000047_03478100_03497299.mRNA mRNA upstream 231772 3478100 ~ 3498471 (+) True CI01000047_03478100_03497299
CI01000047_03752293_03755079.mRNA mRNA downstream 11358 3750931 ~ 3755159 (+) True CI01000047_03752293_03755079
CI01000047_03760606_03768136.mRNA mRNA downstream 21033 3760606 ~ 3768136 (+) True CI01000047_03760606_03768136
CI01000047_03771908_03778580.mRNA mRNA downstream 32335 3771908 ~ 3778580 (+) True CI01000047_03771908_03778580
CI01000047_03778996_03783444.mRNA mRNA downstream 39423 3778996 ~ 3783444 (+) True CI01000047_03778996_03783444
CI01000047_03823906_03854710.mRNA mRNA downstream 82573 3822146 ~ 3854814 (+) True CI01000047_03823906_03854710
TU228535 other upstream 28383 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 642056 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 1152246 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 1411281 2316863 ~ 2318962 (+) True G200003
TU226744 other upstream 1977406 1751469 ~ 1752837 (+) True G199784
TU228781 other downstream 676240 4415813 ~ 4482457 (+) False G201599
TU229634 other downstream 3076144 6815717 ~ 6816118 (+) True G202382

Expression Profile