RNA id: CI01000047_03760606_03768136.mRNA



Basic Information


Item Value
RNA id CI01000047_03760606_03768136.mRNA
length 675
RNA type mRNA
GC content 0.49
exon number 4
gene id CI01000047_03760606_03768136
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3760606 ~ 3768136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGAGTATCTGAAGCATCTGATGCTGATATTTCTCATCACACAGCGCTGTGGGGTTTCCTCACTGAGCACTGGTATTGTGGGAGGTGAGGATGCACCTGCAGGGAACTGGCCTTGGCATGTCAGTCTACACTTTTTTGACTATTACATCTGTGGAGGATCCCTCATCAGCCACGAATGGGTGCTCACTGCAGCTCACTGTGTTTCCTTCTCAGCAAACCAACTGAGAGTCTTTGCTTCCACATTCAGACCCCCAGACAGTTACTGGACTGTTTATCTGGGCAGACAGAGCCAAAACATTTCAGTCTCTAACCCAAACGAGGTCAGTCGAGGAGTCCAATCCATCATTAAACATCCAGACTACGACCCGTATCAGTTCACCAATGACATCGCCTTGCTGAAATTGAGTGAGCCAGTGAACTTAACCAGCTACATCAGCCCAATCCGCCTGGCTGCTAATGACAGTGTCTTTCACAACGGCACCACCTGCTGGTCCACTGGTTGGGAAGAAACTGGCTTTGTAGGCACTCAGTCTGGAACTCTGCAGGAAGTGCAGGTAAATGTGGTGGGGAATAAGGAGTGTGACTGCAGGTTTCAAGACATCCAATTTTGGGACATACCAATCACTCCGACAATGATCTGTGCTAGAGGAGAGATGGGCAAAGGAACATGTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU228618 lncRNA upstream 3931 3756466 ~ 3756675 (+) True G201462
TU228617 lncRNA upstream 18740 3741053 ~ 3741866 (+) True G201461
TU228583 lncRNA upstream 40832 3715514 ~ 3719774 (+) True G201428
TU228534 lncRNA upstream 64256 3693528 ~ 3696350 (+) True G201386
TU228513 lncRNA upstream 72088 3687525 ~ 3688518 (+) True G201379
TU228634 lncRNA downstream 26150 3794286 ~ 3794790 (+) True G201475
TU228600 lncRNA downstream 116919 3885055 ~ 3915947 (+) True G201444
TU228594 lncRNA downstream 124667 3892803 ~ 3921072 (+) True G201439
TU228671 lncRNA downstream 139278 3907414 ~ 3931682 (+) True G201508
TU228672 lncRNA downstream 139472 3907608 ~ 3931898 (+) True G201509
CI01000047_03752293_03755079.mRNA mRNA upstream 5447 3750931 ~ 3755159 (+) True CI01000047_03752293_03755079
CI01000047_03730436_03739299.mRNA mRNA upstream 21033 3730243 ~ 3739573 (+) True CI01000047_03730436_03739299
CI01000047_03617666_03660217.mRNA mRNA upstream 100284 3617604 ~ 3660322 (+) False CI01000047_03617666_03660217
CI01000047_03540545_03612052.mRNA mRNA upstream 148496 3540545 ~ 3612110 (+) True CI01000047_03540545_03612052
CI01000047_03533847_03535991.mRNA mRNA upstream 224360 3533446 ~ 3536246 (+) True CI01000047_03533847_03535991
CI01000047_03771908_03778580.mRNA mRNA downstream 3772 3771908 ~ 3778580 (+) True CI01000047_03771908_03778580
CI01000047_03778996_03783444.mRNA mRNA downstream 10860 3778996 ~ 3783444 (+) True CI01000047_03778996_03783444
CI01000047_03823906_03854710.mRNA mRNA downstream 54010 3822146 ~ 3854814 (+) True CI01000047_03823906_03854710
CI01000047_04012371_04020979.mRNA mRNA downstream 244188 4012324 ~ 4021255 (+) True CI01000047_04012371_04020979
CI01000047_04040223_04054395.mRNA mRNA downstream 271984 4040120 ~ 4054395 (+) True CI01000047_04040223_04054395
TU228535 other upstream 58746 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 672419 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 1182609 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 1441644 2316863 ~ 2318962 (+) True G200003
TU226744 other upstream 2007769 1751469 ~ 1752837 (+) True G199784
TU228781 other downstream 647677 4415813 ~ 4482457 (+) False G201599
TU229634 other downstream 3047581 6815717 ~ 6816118 (+) True G202382

Expression Profile