RNA id: CI01000047_03785018_03800982.mRNA



Basic Information


Item Value
RNA id CI01000047_03785018_03800982.mRNA
length 3298
RNA type mRNA
GC content 0.43
exon number 24
gene id CI01000047_03785018_03800982
representative False

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3784742 ~ 3801004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTCACCAATGAGGCTGTCAACATGTCACTTGGACTTTCAATGTCTATTGATCCTCAGTCTTCAAGAGCAGTGGTTTGTGGTCCAACCATACCTAAGAACTGTGATGCAGTAACCACTTACAATGGCATGTGCTTTGAAATCAGTCCAGATAATGTTGTGAGCAGATCTGTGCCAGAGACTCTGAGAGAATGCCCAATATCACAAATTGCTTTTTTACTGGATGGATCTGGAAGTGTAAATTCTTCGGAGTTTAATAAGACGAAGGCTTTTGTTATTGAAATGATCAAAAGTTTTATAGACAATGATACACAGTTTGCCATTGCACAGTTTTCTACAGAATGTGTCATTCATTATAATTTTCAACAAGTCAAAAACGCCACCTGGTGGCAAGATGCAGTGAATCAGATATCTCAACAGGGAGGAATGACCTACACCGCAAGAGCTATAAGAAAACTTGTGAATGAGCTATTTGTAAGTAGTGGAGGTGCAAGACCATCAGCCAGTAAAATTTTCGTTGTTATCACGGATGGTGAATCAACTGATCCAGGTTATTTGACTGCAGCTGTTCAACAAGCACAAGCTAAAAATATAATACGATATGCTATTGGGACAGATATGATAATGACTGCAGTGGGAGCTTTTCAGTGGAAGGGTGGATATCAGCTGTACAAACCAAATAATGATTCAGATTCAGACTTTCAAGCTGGAAGTGAGCATGACAGTTATTTAGGTTATTCCTTGGCAATAGCAACAATGTCAGAAGCAAAGTATGCAGTAATGGGAGCACCAAGACACGAGCATAAGGGACAAGTAACTGTTTCAAGAATTGGTGGAGAGGACCCAAAGCAGCTGGATCCTCCTAAGCCTCAGATTGGCTCATATTTTGGAGCTGAGGTGTGTGTGGTGGATTTGAACCGTGACTCCAATACAGACCTACTTTTGGTATCGGCACCAACATACATGGAGTCTGACCGGGAGGGCATAGTGTTTGTTTACATCTTCACACATCGGGCAAACTTCTTTTTTTCGGATACACTGGTGGGCATGGCAGGTCAGAGGGGTCGGTTTGGCTCTTCTCTGGCCAGTCCAGCAGATCTGAATGGTGATGGTTTCATGGATGTGCTGATTGGAGCTCCTTTAGAGGAGAATGGACAGGGCAGCATCTATATCTTCAATGGGAGAGATGGAGTTATCATTCCAAAATACTCACAGAGGATTGTTGGATCGTCTGTGCGACCAGGTTTGCGGTTCTTTGGGATTTCATTGAGTCAGTCTTCTCTAGACCAGAGTCAAGACAACCTTCCTGACATTGCTGTTGGGTCCAAGGGAGCAGTTCTGCTTCTCAGGTCCAGACCCATCGTGCTCTTGGAAACCAAAGTAACTTACAACCCAACCAAAATACCAACCAGTGAAACAGACCAGTCACTGGAAAACACCATGAAAGTGTGTTTCACCATGCGTCCATACGGACACCGCATAAGAGGTTTATCCAAAATTAGAAATATTCCTTTATACCTATCTGCAAATATTAATTACACCATAACGCTGGATGCCAAGCGAGAGAAATATCGAGCAAACTTCTCACCCAAAAACCGGCTCCTCAGTGATGTGCTGAACATTGGATTGAATGCAGAAACTTGCAGAAGTCATCGTTTCTTTATAGACGCTTTCTCAGAAGATGATCTGAACCCAGTGTCCAATCAGTTGATGTTCACTTTTGAGGGTCTACCAATTGCCACACTGCAAAACATAAAGCCAATACTGCTGCCAGAGATAAAGACCACCACAGACTACAATCTGGATTTTGAGATAAACTGTGGACATGATGATATTTGTGTTGATGACCTCAGGATGGATTTCAATTTCTCTGGGGCTACAAACATAGAGGTTGGAATAATGCAGGAGATCAATGTGACAGTGTTTGTAGAGAACAGAGGAGAAAACTCATACAACACTCTCTTCACCCTCAAATACCCCTTTGGACTTTCCTACAGGAGATTCACATCTAAACAGGGCAGAGTGGAGTGTGTATCTCTGGACAGTGAGCAAAGAGGTTCATTTGGAGAAACCACCTGCCACATCAGTAAACCCATCCTCAAGGGCAACGCTCAGGATGTGTTTTATATTACATACAGCATCGATAAAGAAAGCACCTTTGATCAAAGTGTGGCATTCACCGCTCAGATCAACAGTGGGAATGACCAACACTCTCAAACCAGTCAGTTATTCAGACAGAAATGCATTGGTGTCAAATATGCCATTAACATTGCCTTAATAAGACATGAAGATTCAAGCCTCAATATTAATTTTACTGCGCAGAAAAATGATCTTGATAGACCAGTCAAACAGATCCTAAAGGTTGAAAATGACTTTAGAGAATTAACATTCAAAGTTTTCATCAGAGTACCAGTGATTCTGGGAGATAAATTCATCTGGACTGACAAAAACCTACAGATCCCAGACTGTGTGAAACAGAGGGATGAGCGGCCGTTTGTAACAGATTTTGTGGAAGTAATTAAAAAAGATCATGTGGTGACTGGACTCAGAGCTGCTGTGTTTGAGTTGGTCAGTTCAGCGTCTCTGGAATATGACGAGAGCAAATATATTTTCTTTTCCTCTGATTCTCAATACACTGAACCATCTCTCCAGATTAACACTCAAGTGGAGGTGTATGAGGAGGCGAACCTGACCAATGTGATCACTGGAGGGGTGAGTGGAGGGGTGATAGGAGGACTGCTGCTACTGGCTCTCATCACAGCACCCCTCTATAAGACGACATGCAGTAAAGACTCTGAGGTTAACCATCGCCCGAGTTGTGCCAGTGGGGCCTACACCGGGCTCAGGAAAAGAGTCTTCAAAGACCGAGACCTATCAGCCCAAACAAAACTCCTGGTCTACAGAGCTGTTGTCCTTCCCACCCTGCTGTATGGTGCCGAGTCATGGACCACCTACAGCAGGCACCTGAAAGCCATGGAGCAATACCATCAAAGATCCTTACGAAAGATTCTGAGGATCAGCTGAGAGGAAGCTAACATGACCAGCATCACCACTACAATAATGCAGAACCAACTTCGATGGACTGGCTATGTCATCCAATACACGTCTCTCCAACGCCGATAGCCTAGTGGTTAATGTGGCGACATATGGTGTAAATGCATTCTCGGCGACCCGAGTTCGATTCCCGTCTCGAAGTCCTTTGCTGATTCTGCCCAATGCTTTCCTGTCTGCTCTCTACTGTCCTCTCTGAATAAAGGCATAAAAAGCCCATAAAATATAACTTAAAAAAAAAAGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230421 lncRNA downstream 9802 3774503 ~ 3774940 (-) True G203022
TU230413 lncRNA downstream 28343 3756169 ~ 3756399 (-) True G203017
TU230339 lncRNA downstream 28959 3754787 ~ 3755783 (-) True G202946
TU230324 lncRNA downstream 31911 3752112 ~ 3752831 (-) True G202938
TU230346 lncRNA downstream 45002 3729962 ~ 3739740 (-) True G202952
TU230433 lncRNA upstream 6350 3807354 ~ 3808077 (-) False G203033
TU230432 lncRNA upstream 6406 3807410 ~ 3808077 (-) True G203033
TU230441 lncRNA upstream 63512 3864516 ~ 3907080 (-) True G203041
TU230442 lncRNA upstream 65159 3866163 ~ 3866531 (-) True G203042
TU230349 lncRNA upstream 75054 3876058 ~ 3877425 (-) True G202954
CI01000047_03741720_03750331.mRNA mRNA downstream 34367 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 68739 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 84773 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03514753_03523245.mRNA mRNA downstream 261497 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03412414_03435209.mRNA mRNA downstream 348559 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03855710_03868781.mRNA mRNA upstream 54539 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03873674_03934985.mRNA mRNA upstream 72455 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03947036_03979744.mRNA mRNA upstream 145302 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 220741 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 304419 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
TU230047 other downstream 651090 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 651090 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2069225 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2950271 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3262500 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 412405 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 477904 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 773331 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1073375 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 2117504 5918508 ~ 5927344 (-) True G203840

Expression Profile