RNA id: CI01000047_03855710_03868781.mRNA



Basic Information


Item Value
RNA id CI01000047_03855710_03868781.mRNA
length 4040
RNA type mRNA
GC content 0.40
exon number 26
gene id CI01000047_03855710_03868781
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3855543 ~ 3869804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTTATTGATATAAGTATCACAGTACCAGTTAGCAGCATTATTGGTTTAAACCCTTGTGTATATATATCTGATTATGTTGATGATTTGTTTTGCTTATAGGAGAACTATATTTATTGTGTTTATGTGTGGCTTGTGTAAACATGTGACTATTTGTGGTGAATGCGAATGTGTTATGTTAGACTTGCCTGCATCATGATATGTTCCATAGGCGGGGCCACGACTTTAAGATGGCCACCAGAACATTCAGTAGGCAAGTGTGGTGAGAGTGGCGTGAGCGTGGTCGGAGTACCGCCACTTTTAGTCTGTTTGGTGCAGCAATAGACTGTTGTCACGAACATGTGTTTTGTATTTTTTTTTTTTTTTTTTGGGTTTATTTTTGGTTTGTAGCACTATTTATTTATTTTTTTTCTGCATCATGGGATTTTTTCTACTCTTTTGGTAAAATAAATTTTTGCATCAAACGGATTTCCTGCTGTCCTGGTTACCTCATTACCTCTAACCGCAAGGTTTATCCACAACAGGCATGAAAGTTTCGGTACATCCCTGGTATTTACTTAATTTTGCTATTATTTTACTATTACAACACTGTAGCTACTAGTATGAAAAGTGCTCCACAAACGATTGGCTGCTCACTTTACAAAAGCATTCACACATGAAAGAGACAGTCACAACATTATTTTGGACATTTCATTTTTGCCTGTTTGTATGTCAGAATAGCTGTTTTGATTTCAAGTTATTTTGGGTATATAGCAGTTTTAAACCTCAAACCAAATGTGTTGATTCCACAAAATAGTACTTGTGATATACTGAAAACTAGTTGTCATTTATTTTTGAAACATAGCAATGGTTTTAAAAAGGAGATTGAGGAAAAAGAGGTTCTTTCCCCTGTGGGAGTTCCTCTTCAGTCACATGCGTCAATCTATTTTCGCTTGATTTATTTCTCATTCCCATCAAACACTTTTCACTCAATCAAGTACTGGTCCCTGTTGTTCACTGTTTGTACCACTGTCTGTATGCAGAAATGGACTGGAATTTACGGTTGCTCTTGTGTTTGTTTTGTGTATGTCAGTCAATAATGGCTTTCAACATTGACCCTGTGACCTGGAAGTACTTCACAAACAATGCAAACAGTGGCTTTGGCTATAAAGTGATACAGAAAGGTGAAAGTCTACTTGTGAGTGATCCTTTAATACAACTCAGTCAAACTCAAAGAGGACAAATATATCACTGTACTGTCTCTGAAGGAAACTGCATGCCACTGTCCATTTCCGTCACCAGTGAGGCTGTCAACATGTCACTTGGACTTTCAATGTCTATTGATCCTCAGTCTTCAAGAGCAGTGGTTTGTGGTCCAACCATACCTAAGAACTGTGATGCAGTGACCACTTACAATGGCATGTGCTTTAAAATCAGTCCAGATAATGTTGTGAGCAGATCTGTGCCAAAGACTCTGAGAGTTTGCCATTGCACAGTTTTCTACAGAATGTGTCATTCATTACAAGTTTCAACAAGTCAAAAACGCAATGGCGTGGCAAGATGCAGTGAATCGGATATCTCAACAGAGAGGAGGGACCTACACCGCAACAGCTATAAGAAAACTTGTGTTGGCAATGCTTTTAATAGTTACAGTGCAAGAAGGGAGCTGGAAAGGATTGCATCTTTACCCTCCAATAATCATGTGTTCAAAGTAAATGATTTCGACGCGCTGGAAAGCATTCGTGAAAAACTCAAAGAGAACATTATTGCCATTGAAGATATGATAATGACTGCAGTGGGAGCTTTCCAGTGGAAGGGTGGATATCAATTGTACAAACCAAATGATAAGTCAGATGACTTTCAAGCTGGAAGTGAGCATGACAGTTATTTAGGTTATTCTTTGGCAATAGCAACAATGTACAGAGGAAAGTATGCAGTCATGGGAGCGCCAAGACACAAACATAAGGGACAAGTAACTGTTTCAAAAATTGATGGAAAGGACTTAAAGCAGCTGGATCCTCCTAAGCCTCAGATTGGCTCATATTTTGGAGCTGAGTCAGACTTCATTTTTTCGGATACACTGGTGGGCATGGCAGGTCAGAGGGGTCGGTTTGGCTCTTCTCTGGCCAGTCCAGCAGATCTGAATGGTGATGGTTTCATGGATGTGCTGATTGGAGCTCCTTTAGAGGAGGATGGACAGGGCAGCATCTACATCTTCAATGGGAGAGATGGAGTTATCATTCCAAAATATTCACAGAGGATTGTTGGATCATCTGTGCGACCAGGTTTGCGGTTCTTTGGGATTTCATTGAGTCAGTCTTCTCTAGACCAGAGTCAAGACAACCTTCCTGACATTGCTGTTGGGTCCAAGGGAGCAGTTCTGCTTCTCAGGTCCAGACCCATCATGCGCTTGGAAACCAAAGTAACTTACAACCCAACCAAGATACCAACCAGTGAAACAGACCAGTCACTGGAAAACACCATGAAAGTGTGTTTCACCATGCGTCCATACGGACACCGCATAAGAGGTTTATCCAAAATTAGAAATATTCCTTTATACCTATCTGCAAATATTAATTACACCATAATGCTGGATGCCAAGCGACAGAAATATCGAGCAAACTTCTCACCCAAAAACCGGCTCCTCAGTGATGTGCTGAACATTGGATTGAATGCAGAAACTTGCAGAAGTCATCGTTTCTTTATAGACGCTTTCTCAGAAGATGCTCTAAACCCAGTGTCCAATCAGTTAACATTCACATTTGAGGGTCTACCATCTAGAACAATGCAAAACATAAAGCCAGTACTGCTGCCAGAGATAAAGACCACCACAGACCACAATCTGGATTTTGAGATAAACTGTGGACATGATGATATTTGTGTTGATGACCTCAGGATGGATTTCAATTTCTCTGGGGCTACAAACATAGAGGTTGGAATAATGCAGGAGATCAATGTGACAGTGTTTGTAGAGAACAGAGGAGAAAACTCATACAACACTCTCTTCACCCTCAAATACCCCTTTGGACTTTCCTACAGGAGAATCACATCTAAACAGGGCAGAGTGGAGTGTGAATCTCTGGACAGTGAGCAAAGAGGTTCATTTGGAGAAACCACCTGCCACATCAGTAAACCCATCCTCAAGGGCAACGCTCAGGCTGTGTTTCTTATTACGTACAGCATCGATAAAGAAAGCACCTTTGATCAAAATGTGAATTTCACCGCTCAGATCAACAGTGGGAATGACCAACACTCTCAAACCAGTGAATTATTCAGGTGGAAGAGCATTGGTGTCAAATATGCCATTAACATTGCCTTAATAAGACATGAAGATTCAAGCCTGCACATTAATTTTACTGCACAGAAAAATGATCTTGACAGACCAGTCAAACAGATCCTAAAGGTTGAAAATGACTTTAGAGAATTAACTTTCAAAGTTTTCATCAGAGTACCAGTGATTCTGGGAGATAAATTCATCTGGACTGACAAAAACATACAGATTCCAGACTGTGTGAAACAGAGGGATGAGCGGCCGATTGTAACCGATTTTGTGGAAGTAATCAAAAAGGATCGAATGGTGACTGGACTCAGAGCTGCTGTGTTTGAGCTGGTCAGTTCAACATCTCTGGAATATGACGAGAGCAAATATATTTTCTTTTCCTCTGATTCTCAACACACTGCACCATCTCTCCAGATTAACACTCAAGTGGAGGTGTATGAGGAGGCGAACCTGACCAAAGTGATCATTGGAGGGGTGATTGGAGGACTGCTGCTACTGGCTGTCATCACAGCGGCCCTCTATAAGGCTGGATTCTTTAAAAGCCAATACAAGCAGTTGCTAGAAAATGCAGAACAAAGTGCTGAAGATGAGCCAATCACTGAAAAATTAGGTTAACAATAATAACCAACCACAATAGCGGTATATTAAAGAATCAAATATGGCTTTACATGCAAATGTGTAGAATATAGTATGTGTATGTATGCAAATATTATTGATATACTGCTTGTACGATCATCATAAGCTTTTCATTATCAAATTCTGTAATGTGTTTATCAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230424 lncRNA downstream 11489 3777329 ~ 3844054 (-) True G203025
TU230420 lncRNA downstream 17315 3774503 ~ 3838228 (-) False G203022
TU230418 lncRNA downstream 25091 3766627 ~ 3830452 (-) False G203021
TU230417 lncRNA downstream 25091 3766825 ~ 3830452 (-) True G203021
TU230433 lncRNA downstream 47466 3807354 ~ 3808077 (-) False G203033
TU230349 lncRNA upstream 6254 3876058 ~ 3877425 (-) True G202954
TU230381 lncRNA upstream 9279 3879083 ~ 3915968 (-) True G202986
TU230446 lncRNA upstream 11074 3880878 ~ 3910785 (-) True G203046
TU230452 lncRNA upstream 35818 3905622 ~ 3906224 (-) True G203051
TU230461 lncRNA upstream 79812 3949616 ~ 3955274 (-) True G203059
CI01000047_03785018_03800982.mRNA mRNA downstream 54539 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 105168 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 139540 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 155574 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03514753_03523245.mRNA mRNA downstream 332298 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03873674_03934985.mRNA mRNA upstream 3655 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03947036_03979744.mRNA mRNA upstream 76502 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 151941 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 235619 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 258098 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
TU230047 other downstream 721891 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 721891 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2140026 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3021072 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3333301 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 343605 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 409104 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 704531 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1004575 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 2048704 5918508 ~ 5927344 (-) True G203840

Expression Profile