RNA id: TU230349



Basic Information


Item Value
RNA id TU230349
length 647
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G202954
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3876058 ~ 3877425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CACCTTTGATCAAAATGTGAATTTCACCGCTCAGATCAACAGTGGGAATGACCAACACTCTCAAACTAGTGAATTATTCAGGCGGAAGAGCACTGGTGTCAAATATGCCATTAACATTGCCTTAATAAGACATGAAGATTCAAGCCTGCACATTAATTTTACTGCACAGAAAAATGATTCTGATAAACCAGTCAAACAGATCCTAAAGGTTGAAAATGACTTTAGAGAATTAACATTCAAAGTTTCCATCAGAGTACCAGTGATTCTGGGAGATAAATTCATCTGGACTGACAAAAACCTACAGATCCCAGACTGTGTGAAACAGAGGGATGAGCGGCCGCTTGTAACAGATTTTGTGGAAGTAATTAAAAAGGATCGTGTGGTGAACTGCTCTGTGGCGGTGTGTGCCGTGTTCAGCTGTGACGGCACTCTCATAAAGAATAAAAGGAAACTCTATAATATATCTGGCAACGTGAGCTCTGGATGGATAGAGCAGACTGGACTCAGAGCTGCTGTGTTTCAGTTGGTCAGTTCAGCGTCTCTGGATTATGACGAGAGCAAATACGTTTTCTTTTCCTCTGATCCTCAACACACTGCACCGTCTCTCCAGATTAACACTCAAGTGGAGGTGTATGAGGAGGCGAACCTGACCAAAGAGATCCTTGGAGGGGTGATAGGAGGACTGGCTGTCCTCACAGCGGCCTTCTATAAGGCTGGGTTCTTCAAAAGCCAGTACAAGCAGATACTGCTGGAGGTGCAGCGGGATGCAGGAGGAGAGCCAAACATGACACAATAATGTGCACTCAAATATCTCATAAGATATATGTACTGATTGTGTTTTGTGGGCTTGAGAATGAAACGTGAATATATTTAACACCTCAGTGTAGCAAAATATTTCAGCCTAATTTAGAACACTTTATGAATGTTCAATGATAACACAATGATAATCAGACAAACTTAAGAATGACAAAACTGAACATAACTCTGACACATATCTCTTCTAATGACTGAGTATAAACTCTTTTCCTCACATGCACACGGTTTTTGAGATTTTTTTTTTTATTACTAGGTTTCTTCAGATTTACTCTGGGTGTATTTTGAAAATGTTTTATTGCTTAATATAAAGATATTGTTTATTTTGCTTAGCAGATATTGTTGCGTTATATATATACATTATGGCACTTATTGTCAAGGAAAGCAACAAAAAAATAAAAATAAAATAATTTTGTCATTATCCATTATACTTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230442 lncRNA downstream 9527 3866163 ~ 3866531 (-) True G203042
TU230424 lncRNA downstream 32004 3777329 ~ 3844054 (-) True G203025
TU230420 lncRNA downstream 37830 3774503 ~ 3838228 (-) False G203022
TU230418 lncRNA downstream 45606 3766627 ~ 3830452 (-) False G203021
TU230452 lncRNA upstream 8444 3905622 ~ 3906224 (-) True G203051
TU230461 lncRNA upstream 52438 3949616 ~ 3955274 (-) True G203059
TU230470 lncRNA upstream 107455 4004633 ~ 4075704 (-) True G203067
TU230321 lncRNA upstream 117895 4015073 ~ 4018863 (-) True G202935
TU230354 lncRNA upstream 147532 4044710 ~ 4052438 (-) True G202959
CI01000047_03855710_03868781.mRNA mRNA downstream 6254 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 75054 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 125683 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 160055 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 176089 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03947036_03979744.mRNA mRNA upstream 49128 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 124567 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 208245 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 230724 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 240421 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
TU230047 other downstream 742406 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 742406 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2160541 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3041587 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3353816 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 316231 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 381730 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 677157 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 977201 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 2021330 5918508 ~ 5927344 (-) True G203840

Expression Profile