RNA id: TU230381


Basic Information

Item Value
RNA id TU230381
length 173
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G202986
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3879083 ~ 3915968 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCTGAACCACCTCGAGGACTCTTCTCTTTCATTTATTGCCTTGACTGTCTCACCTCATGCGTCCTCCATATCTACATTTGACCGGTTACAATGGACCACAACTTCTGTATCAGATTGTACATCTTTTGTGNNTCTCAGTCGGTGATGGCTTTTAACATTGATCCTGTTACCTGGAAAACTTTCACTGCGTCTTCACAGAGTCAAAATGTTGCCTTTGGCTATAAGGTGATACAGAAAGACAACAGTCACCAATGAGGCTGTCAACATGTCCCTTGGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230442 lncRNA downstream 12552 3866163 ~ 3866531 (-) True G203042
TU230424 lncRNA downstream 35029 3777329 ~ 3844054 (-) True G203025
TU230420 lncRNA downstream 40855 3774503 ~ 3838228 (-) False G203022
TU230417 lncRNA downstream 48631 3766825 ~ 3830452 (-) True G203021
TU230461 lncRNA upstream 33648 3949616 ~ 3955274 (-) True G203059
TU230470 lncRNA upstream 88665 4004633 ~ 4075704 (-) True G203067
TU230321 lncRNA upstream 99105 4015073 ~ 4018863 (-) True G202935
TU230354 lncRNA upstream 128742 4044710 ~ 4052438 (-) True G202959
TU230316 lncRNA upstream 159951 4075919 ~ 4080229 (-) False G202934
CI01000047_03855710_03868781.mRNA mRNA downstream 9279 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 78079 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 128708 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 163080 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 179114 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03947036_03979744.mRNA mRNA upstream 30338 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 105777 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 189455 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 211934 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 221631 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
TU230047 other downstream 745431 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 745431 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2163566 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3044612 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3356841 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 297441 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 362940 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 658367 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 958411 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 2002540 5918508 ~ 5927344 (-) True G203840

Expression Profile