RNA id: CI01000047_03947036_03979744.mRNA



Basic Information


Item Value
RNA id CI01000047_03947036_03979744.mRNA
length 3396
RNA type mRNA
GC content 0.39
exon number 20
gene id CI01000047_03947036_03979744
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3946306 ~ 3980325 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGACTACACTGAAACTAGCTGAGAAGCTCAAAGGCCTGCTTAGTCAACTTGAAAACCACTTCAGTTTTGCCCAAAAACCCCTTAAACATATTTTACTGTTACATGCTCAGGAAAATATAATCATACACAGGAACAAAACAAGGTCAAGCATTTAAATAATAAATGGGACCTTGTCTTACCTTCCCGTGGCTCAAAGACCAGGGACTCTTCATTCAGATTTTGATGGAAGGATCGAATCCAGGTTCTGAAGCCAAAAGAACCCTTTCACTATCAAGCCAGAAAGCGGGCCATCAGAGAAAAATTTCATCATGGGCCCAGCCGTCAGTCTGACTGTTCAAAGGTGTCTCCTGAACATGTACATGTACACCAAATTTTAGCACATGCAATTTAGAACTCTGGTTTGTATTTTCTAGTAATTAACATTAAATAAACATTCCAAATTCAAATGTATTAAATTGCACTGCTGTGTAGAGTATTTGTGTTCCTTTTGGAGTTTTTTATTTTTATGTTTATTTTTTTATTTTTTATGAAAATGAACAAACTGTCTGTGTGTTAATGAAGTGCCCTCAGAAGCAGTCAACATGTCTCTTGGACTTTCCATGGTTCAAGATCAACAGTCTTCAAAGCTGGCAATTTGTGGTCCAACCATTCCAAAGAAATGTGTATCAGTTACCACCTACAATGGCATGTGCTTCATCAGTGAAAACAGTGTGTTTAAACTGCCAGTACCGAGCTCTCTGAGAGACTGTCCTGGTCAGATTGACATAGCTTTTCTATTAGATGGATCTGGGAGTGTGCAGAGTTGGAATTTCATTACGATGAAGACTTTTGTTACAAACGTGATCAAGCGTTTTACTGAGCGAGATGCACAGTTTGCTATAGCACAATACTCCAGTGGTTGTGTAATTCACTACAGTTTCAATCAACTCAAAACTCAGGACAGCACATGGGAATCTAAAGTGACAAATATACCGTACCAAAATGGAGGTGTTACAGCAGCAATTTTAAGTGCAGCAGGCACAACACCCATGCGCAGAGAGTCATTTACTATACTCAGGACAACAGGGCATAAAGAAGCGAAGCGTGATTTAAACAAACCGGTCGGCAGTGCTTTTGAAAGTTTCAGTGCAAAACAGGAGTTGAATGACATTGCTACTGATCCAGACACTGATCACGTGTTCAAAGTGACAGACTTTAATGCACTGAATAATATTCTTCAAAAGCTGGAAGAAAACATTATTGCCATTGAAGGAACCCAGACTTCAGGTGATTCCTCCAGAATGGAGTTTGCACAGGATGGATTCAGCACAGCTTTCACATCATATGGAAGCGTGTTAATGAGTGCTGTGGGAGCTTTCCAGTGGAAAGGTGGATATCAGGAATATTTGCCAGACTACTCCTTTCAAACAGGCACTGAGCATGAAAGCTATCTAGGTTATTCACTGGCTACTGCAACAACGTCAAAGACCAGCTTTGCTATTCTAGGAGCCCCGAGATACAAACATAAAGGACAAGTCTTTGTATCACAACTCAGAACCAATCAATTTAAACAGCTGCTGGACTCTCCCAAGCCTCAGATTGGCTCATATTTTGGAGCTGAGGTGTGTGTGGTGGATTTGAACCATAACTCCAATACAGATCTACTTTTGGTATCGGCACCAACATACATGGAGTCTGACCGGGAGGGCATAGTGTTTGTTTACATCTTCATGCGTGAGGCAAATTTAATGTTTTTGGATACACTGGTGGGCATGGCAGGTCAGAGGGGTCGGTTTGGCTCTTCTCTGGCCAGTCCAGCAGATCTGAATGACCAGAGTCAAGACAACCTTCCTGACATTGCTGTTGGGTCCAAGGGAGCAGTTCTGCTTCTCAGTGGAAATGACAAACACTCAATCGACAGTGAATTTAAAAAACAGAAAACCATCGATGTCAAATATGCCATCTATATTGCCTTGATAAGGCATGAAAATTCCACCATCCACATTAATTTTACTTCAGGGAAAAGGGATCTTATGAAACCCGTCCAGCAGATAATAAAGGTTCAGAATGACCTCAGAGAATTAACTTTCAAAGTGTTCATCAGAGTACCAGTGAAACTTGGTGATACTGACATCTGGACTAATTCAAATTTGCAAATTTCTGGCTGTAAAAGTGAGAAAATGGAGAAGCCTGTTACCACCAATTTTACATTGTTGGATGTTATTAAAAATCATCATATCGTGGTTCAGAATGACCTCAGAGAATTAACTTTCAAAGTGTTCATCAGAGTACCAGTGAAACTTGGTGATACTGACATCTGGACTAATTCAAATTTGCAAATTTCTGGCTGTAAAAGTGAGAAAATGGAGAAGCCTGTTACCACCAATTTTACATTGTTGGATGTTATTAAAAATCATCATATCGTGACTGGACTCAGAGCTGCTGTGTTTGAGTTGGTCAGTTCAACATCTCTGGATTATGACAAGAGCAAATACATTTTCTTTTCCTCTGATCCTCAACGCACTGCACCGTCTCTCCAGATTAACACTCAAGTGGAGGTGTATGAGGAGGCGAACCTGACCAAAGAGATCATTGGAGGGGTGATAGGAGGACTGCTGCTACTGGCTCTCCTCACAGCGGCCCTCTATAAGGTATATCGCCTTCATAAAATCAGTTTCAGTCCCTGACACTTTCACCTTTCTACACAATCTATATTTTTAATGCTTACAGCATATTAACGCATATTTTCTCTTTTTACAAGGCTGGGTTCTTCAAAAGCCAGTACAAGCAGATGCTGCAGGAGGCGCAGGGCGATGCAGGAGGAGAGCCAAACATGACACAATAATGTGCACTCAAACAGTTATAAGATACAGTATATGTACTGATTGTGTTTTGTGGGCTTGAGAATGAAACATGGATATATTTAAAACCTCATTGACTGATTTAGAACACCTTATTTAAATGATAACTGGACAATTTTGAAGTTACTTCAGATTACTCGTCATCTCATCAGTGAGCACAACAAGTTACCAAAGTATTTATAGCCTTTTAAATATTTGATTTCCTTCTTTGTTATGAAAACTGATAATGACTGATGATGAACTGTAGCAGAAATATTAGAAATATTGGAGGATCTTTTTCTCACATGCACATTGTTTTTGAGATGTTTTCTATGGAAGCTTGTTGTAAATACAAAAGGTAATTTCGACTTTTTATCTCACAATTCTGACTTTTGTAACTTTTTCTCTGAATTGTGAGATACAAACTTGCAATTCAGAGAAAAAAAGTTACAGTTGCAAGATATAAAATCCAGTTCTGAGAAAAAATTGCAATTGCATCATAATTCTGACTTTTGCCATTATCCATTACACTTATTTGTGTGTCATTATGCATATCTTAATTTGTATTTTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230381 lncRNA downstream 30338 3879083 ~ 3915968 (-) True G202986
TU230446 lncRNA downstream 35521 3880878 ~ 3910785 (-) True G203046
TU230441 lncRNA downstream 39226 3864516 ~ 3907080 (-) True G203041
TU230452 lncRNA downstream 40082 3905622 ~ 3906224 (-) True G203051
TU230393 lncRNA downstream 40711 3796500 ~ 3905595 (-) True G202998
TU230470 lncRNA upstream 24308 4004633 ~ 4075704 (-) True G203067
TU230321 lncRNA upstream 34748 4015073 ~ 4018863 (-) True G202935
TU230354 lncRNA upstream 64385 4044710 ~ 4052438 (-) True G202959
TU230316 lncRNA upstream 95594 4075919 ~ 4080229 (-) False G202934
TU230318 lncRNA upstream 95594 4075919 ~ 4086107 (-) True G202934
CI01000047_03873674_03934985.mRNA mRNA downstream 11177 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03855710_03868781.mRNA mRNA downstream 76502 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 145302 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 195931 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 230303 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_04022011_04032483.mRNA mRNA upstream 41420 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 125098 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 147577 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 157274 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04213574_04213976.mRNA mRNA upstream 233096 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
TU230047 other downstream 812654 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 812654 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2230789 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3111835 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3424064 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 233084 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 298583 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 594010 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 894054 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1938183 5918508 ~ 5927344 (-) True G203840

Expression Profile