RNA id: TU230321


Basic Information

Item Value
RNA id TU230321
length 942
lncRNA type read_through
GC content 0.43
exon number 5
gene id G202935
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4015073 ~ 4018863 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCGGGGCATTTATTTCTATATACATATATTTTTATACAGAGAATGATGACAAGCTCCAAAATGACAAAAAACATCTTAAAAGTATCTTGAAAGTAGTCCATATGTCTTAAATTATATTAATAATTAGTCATATAGTTGTGTAGTAAATTACAAGTCTTCTGAAGCCATACAATAGCAATTGCGTTAGGGACAGATCAAAAGTGTGAACTATTCTTTCAAGTCTCTCTATCTTGTTTAAACAACCCTGCTGTTGCATGTTCACTTGTCTTGATTCTCTGTCTGCTCTCTGCTTCCCTCTGCAGGGAGATTCTGGAGGTCCATTACAGTGCAAACAGGGTTCTGTGTGTGTCCTCTTTACGTCACGGAGAACGTGGAGGGAGCCGCCATTGGCTTTGTGACCTTTTCATCCAATGGCACTGATGGCAGCTTTACATGCTCTAGCTCAGCCACACTTCACTTCTCATTCTACTCTAGTTTTATCATTCTCTTCACTGCACTCATCTCAAACTTCCTCACACTCATAGCCACTTAAAACTGACTCACACACACATGCAATTCTGAGCTAATGTTAATGCTAAGCATGATAAGGGGAAAATTAATTGTTGACAGAGAAAATACACAGTGGAATTCTGAATGACATGAAGAAGGACATAGAATGATTAAAAAAATGTTTTGAAAATTAAAGCTTCTGAAGTCATTTGTGTGGTTAACATGAGCAGCTAGCATAGGCTGGTAGATGCTGTAAACAACTTTCTCCTCTGACAGCTGTTCAAATTTAGCTGTGTGATGAAATATATATATATCGCAAGCAACACATGAATTGCAAAAATGTCATATTATAGTACAAAAAATCAGAGGTTTTGTATAAATCTAGGTCACATATTTTTGGGCCTGTTGAGCACATGCCATTGAGATGATAGGAATGCTAGCAGATTGTTTTCTCCAATTATATATTAGACTTTTAATGGGCAGGTTTATAATCATTAAATTAGTCAGTCTGTGATCTGAAACAGCAAAGACACAGAACTTAATTGAATAGTTATACATTTAATATATAAAGTAATGCAATTTTCAACATTCAAAGTTGATGATACAGAGATCACAAACTGGTGAAGGCAATCAAACACTATGTGTTGGTAGGTTGGTTCTTTATTCTTTTGCCAAAAGAAAATATATAGTGAAAAAGAAAACAACAGATGCAAAACTGTAAGGGTTGCAGCTATTGAAATAGGACAGATCAGTAGAATGACAGCATGAAAGGATTTTTTCTGTTTGGTCGGTTACAGTGATACTTATTTACTGTGACATCATTGTCAGATGACAGTGAAAAATGGAATAACAGTGAGTAAGGGTCACAGAAATGATTTATCACACTGTGTACGTGACAGAACAGACAGATTAGTCAGTTGGTGCGGTCAGTTGTGTTTTTTTAATAAGCATGGTTGGCCACAAACAGAGACTCTCCCGCCGCAGCTCCGGTGTCTCCTTTGGAGACATATTTACCAATGGCTGCTGCGCTGTTGTCAAGGCTCTCTTGACAAATTCCTCCTGGCAGGCCTTGCCATTCTCCTTCTTGCCCCCCCAGGCTTTCAGTGCGGAGGCTTGCAGGGCGCGGCCGTAAGAGAAGGTAAGGGCCCAGGGTTTGTTGAGGGGACACTGGTTAATAGCGCTCAGATTGACTGAGGCCTCCTCCTCACTCTGGCCTCCAGACAGGAAGGTGACCGGGAACTGCAGGGGGAACAGTGCGACGCAGGGCGGTGACGGTTGCCATTGCAATTTCCTGAGGGGCGTACTTGTGGGAGCAAGAGTGACCAGCGGTCACCATGTTGGGTTTTAGCAGGGTTCCCTCCAGGTACACGTGGTGGTCTGACAGAGCCTTGTACACAGCCGCCAGGACCTTCTCTGTCACATACTGGCATCTCTTCAAGTCGTGGTCACCATCAGGCAGGATCTCAGGCTCCACAATGGGCACGATTCCACCATCTGGCAGATGCTGGCGTAGCGGGCCAGAACATTGGCATTCTCAATAATGGCAAGATTGGAGGGAGTAGTGGGAGTGATCTTCAACACACAGCGCCATTTAGCAAAGTCAGCACCGTCTTTTTTATACTGAGCACAACGCTCATACAGCCTTCTGTTCTCCTCTGTGTTCTCAGCGTTTATGCTCTGGAAGCGCTTTGCAACGCTGCCTATGGTGACCGCAGGGTGAAAAGAAAGATCAGAATTCCCCATTTGGGTGAACTATCATTTTGAAAGCATATTGAGTACCTGTGGACTCATCAGCTGCAAGAATTCCCTTGCCGGGAGCAACAATCCTCTGAGCAATATCGCTCAGCTCTTTCTTCTGATCGGGGCTCAGGAATGGATATGCGTGAGGCATCTTTCTCTCTTGCTGAAAGGAGAACAGACAAAATGGAGCGACACTTGAAGCGAGGGAGATAGAAAGAAAGAGAGGATAAAATGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230461 lncRNA downstream 59799 3949616 ~ 3955274 (-) True G203059
TU230381 lncRNA downstream 99105 3879083 ~ 3915968 (-) True G202986
TU230446 lncRNA downstream 104288 3880878 ~ 3910785 (-) True G203046
TU230452 lncRNA downstream 108849 3905622 ~ 3906224 (-) True G203051
TU230349 lncRNA downstream 117895 3876058 ~ 3877425 (-) True G202954
TU230354 lncRNA upstream 22301 4044710 ~ 4052438 (-) True G202959
TU230316 lncRNA upstream 53510 4075919 ~ 4080229 (-) False G202934
TU230318 lncRNA upstream 53510 4075919 ~ 4086107 (-) True G202934
TU230490 lncRNA upstream 69300 4091709 ~ 4091935 (-) True G203082
TU230492 lncRNA upstream 70769 4093178 ~ 4093411 (-) True G203084
CI01000047_03947036_03979744.mRNA mRNA downstream 34748 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_03873674_03934985.mRNA mRNA downstream 79944 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03855710_03868781.mRNA mRNA downstream 145269 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 214069 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 264698 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_04105620_04111019.mRNA mRNA upstream 83014 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 105493 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 115190 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04213574_04213976.mRNA mRNA upstream 191012 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04285605_04286644.mRNA mRNA upstream 262818 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
TU230337 other downstream 28671 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 881421 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 881421 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2299556 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3180602 833941 ~ 834471 (-) True G200472
TU230541 other upstream 191000 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 256499 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 551926 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 851970 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1896099 5918508 ~ 5927344 (-) True G203840

Expression Profile