RNA id: CI01000047_04137872_04142531.mRNA


Basic Information

Item Value
RNA id CI01000047_04137872_04142531.mRNA
length 795
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000047_04137872_04142531
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4137599 ~ 4142531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACAGAGAATTGGCAGATGATGAAATTGAAGAGCTGAGAGAGGCATTTAATGAATTTGATAAAGATAAAGATGGTCTAATTAGCTGTAAGGACCTGGGAAACCTGATGAGGACGATGGGCTATATGCCAACCGAGATGGAGCTGATCGAGTTGGGCCAGAACATCAACATGAATTTGGGAGGGAGGGTAGACTTTGAAGACTTTGTGGAGTTAATGGCCCCAAAGCTTTTGGCAGAAACAGCAGGCATGATTGGTGTGAAGGAACTGCGAGATGCTTTCAAAGAGTTCGATATGGACGGCGATGGCTCGATCACTACTGAGGAACTGAGATGTGCTATGAGTAAATTACTGGGAGAACACATGAACCACAGAGAGATTGACGCTGTCGTCCGAGAGGCGGACAATAATGGTGATGGTACAGTAGATTTTGAAGCACGGTCTACTGTCGTCACCCTCGACGACATCATTTTTATGAATGATGCTACATCCTGTAGGCTTCCAGTAACTAAATATCTCTATTAATCTGTCATTTCTCAGAAAAAAGAAAAGAAAAAAAAAAACTGAAACAAGCCATGTAATCTATGTACTGGGCTGCTGCTGAGAGCAGATGGTGAAGATGAGAAATCACTTTTAAGAGAAACTTTCTTTGGAAGATTAGAGGGGATAATGGAAGGATGATGGGATGAGAGGCACTGAAAGATTTTGGACTGTTTATGAGCAAAGTGATGTGGACGTACTGCAAAAACTGTACAGAAGGAGAAAAAAAAATGAGACACTTGTTTGAAACGAAATAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230392 lncRNA downstream 42707 4094355 ~ 4094892 (-) True G202997
TU230493 lncRNA downstream 43978 4093419 ~ 4093621 (-) True G203085
TU230492 lncRNA downstream 44188 4093178 ~ 4093411 (-) True G203084
TU230490 lncRNA downstream 45664 4091709 ~ 4091935 (-) True G203082
TU230318 lncRNA downstream 51492 4075919 ~ 4086107 (-) True G202934
TU230556 lncRNA upstream 76866 4219397 ~ 4219733 (-) True G203143
TU230606 lncRNA upstream 265942 4408473 ~ 4408765 (-) False G203189
TU230605 lncRNA upstream 266010 4408541 ~ 4408765 (-) False G203189
TU230607 lncRNA upstream 266010 4408541 ~ 4408827 (-) True G203189
TU230610 lncRNA upstream 277628 4420159 ~ 4425359 (-) True G203191
CI01000047_04128025_04134725.mRNA mRNA downstream 2874 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04105620_04111019.mRNA mRNA downstream 26415 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04022011_04032483.mRNA mRNA downstream 104933 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_03947036_03979744.mRNA mRNA downstream 157274 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_03873674_03934985.mRNA mRNA downstream 202470 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_04213574_04213976.mRNA mRNA upstream 70890 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04285605_04286644.mRNA mRNA upstream 142696 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
CI01000047_04289186_04338565.mRNA mRNA upstream 146532 4289063 ~ 4339770 (-) True CI01000047_04289186_04338565
CI01000047_04345335_04375341.mRNA mRNA upstream 202596 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04385029_04397861.mRNA mRNA upstream 242016 4384547 ~ 4397861 (-) True CI01000047_04385029_04397861
TU230337 other downstream 151197 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1003947 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 1003947 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2422082 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3303128 833941 ~ 834471 (-) True G200472
TU230541 other upstream 70878 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 136377 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 431804 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 731848 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1775977 5918508 ~ 5927344 (-) True G203840

Expression Profile