RNA id: CI01000047_04285605_04286644.mRNA


Basic Information

Item Value
RNA id CI01000047_04285605_04286644.mRNA
length 755
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000047_04285605_04286644
representative False

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4285227 ~ 4286694 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGACGTGCAAAGTAACCTCGCGTTGCGTCACAACACAGCGCTTCAAACATGGCAGACAAGAGTAGTCAAGGGGACTCCAAACCTGAAGCCCAGTTTGCAAAGAGAATAGACCCTGCAAAGGAAGATCTGACCAAGGAACAGTTGCAGTTCATCCGACAAGTGGAGCTGGCGCAATGGAAGAAGAATACAGGCAAGCTCCGGGGTCGAAACGTTGCGACAGGACTCGCTATCGGCGCTGTAGTGCTCGGCATCTGTATCCTTTACAACTGTGTTACACAAGATGGCTACACTTTCTATTCAGTATCCCAAGAAAAAATCATGGATGAAATAGATGAAGAAGCAAAAGCACGTGCTCCGAAGACCGGAGCCAACTGAATGAACTTTTATCTTCAGGAACTGTCTGCACTGACACGCAGTTGAGCGCGGGCGCCAGCAGAGGGCGCCACATCCATTCAAATAGTCTCCTGTTGGAACTGAGACTCGATATTTAATGAATACAAGGAGGAATCCTGCGTTTTTATAGTTTTCTATAAAAACGTGTTTCTGATATGCAGTTCATGGAATATGTTAGTATAGACATGGAAACTGAATGTCATAATATTCTCTGTTAAACTATGAATACTACAGTAATTCTACTGGTCTTCTTGCTTTGAGTGCAAATACATACACTATCAGAGTGAGATTAATTTAAATAATGGCCACCATTTTCTTTTATGTTTGTCTTCTTTTTTTTTTTTTAATGAATACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230556 lncRNA downstream 65494 4219397 ~ 4219733 (-) True G203143
TU230386 lncRNA downstream 108457 4130712 ~ 4176770 (-) True G202991
TU230392 lncRNA downstream 190335 4094355 ~ 4094892 (-) True G202997
TU230493 lncRNA downstream 191606 4093419 ~ 4093621 (-) True G203085
TU230492 lncRNA downstream 191816 4093178 ~ 4093411 (-) True G203084
TU230606 lncRNA upstream 121779 4408473 ~ 4408765 (-) False G203189
TU230605 lncRNA upstream 121847 4408541 ~ 4408765 (-) False G203189
TU230607 lncRNA upstream 121847 4408541 ~ 4408827 (-) True G203189
TU230610 lncRNA upstream 133465 4420159 ~ 4425359 (-) True G203191
TU230623 lncRNA upstream 215511 4502205 ~ 4502522 (-) True G203204
CI01000047_04213574_04213976.mRNA mRNA downstream 71251 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04137872_04142531.mRNA mRNA downstream 142696 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04128025_04134725.mRNA mRNA downstream 150502 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04105620_04111019.mRNA mRNA downstream 174043 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04022011_04032483.mRNA mRNA downstream 252561 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04289186_04338565.mRNA mRNA upstream 2369 4289063 ~ 4339770 (-) True CI01000047_04289186_04338565
CI01000047_04345335_04375341.mRNA mRNA upstream 58433 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04385029_04397861.mRNA mRNA upstream 97853 4384547 ~ 4397861 (-) True CI01000047_04385029_04397861
CI01000047_04398951_04431817.mRNA mRNA upstream 112257 4398951 ~ 4431817 (-) True CI01000047_04398951_04431817
CI01000047_04458864_04461672.mRNA mRNA upstream 172077 4458771 ~ 4462094 (-) True CI01000047_04458864_04461672
TU230541 other downstream 70797 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 298825 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1151575 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 1151575 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2569710 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230543 other upstream 287641 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 587685 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1631814 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1756559 6043253 ~ 6043789 (-) True G203881

Expression Profile