RNA id: CI01000047_04385029_04397861.mRNA



Basic Information


Item Value
RNA id CI01000047_04385029_04397861.mRNA
length 1210
RNA type mRNA
GC content 0.40
exon number 5
gene id CI01000047_04385029_04397861
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4384547 ~ 4397861 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGCCTCAGATAATCTTCCCAGCGCTCAGGTGTGTGGAAGAACCACATTTACCACCAGCAGCAGGATAGTAGGAGGTCAGAACGCTTCAGCTGGACGCTGGCCATGGCAGGCTAGCATTCTTCTGTACGGCTATCACTTCTGTGGAGGTTCTCTCATCAACAAAGAGTGGGTGCTGACCGCTGCCCACTGTGTTGAGGGTTATTCCATCTATTCTTTAGGTGTGGTTTTGGGGCGTCAGACCCAGGAAGGCGACAACCCCAATGAAGAGTTTATAGATGTGATGACAATCATCAAACATCCCAGTTACAACTATCTTACAAATGACAATGATATCGCTCTGCTCAAACTGAGATCTCCCGTCAACTTCACTGATTACATCAGCCCCGTGTGTCTAGCAGCTGATGGCAGTGTGTTTAACAACGGCACAGAGAGCTGGATCACTGGATGGGGAAACATTGATGAAGGAGTGTCCCTCCCGTCCCCTAATGTTCTACAGGAAGAGGAGGTTCCTGTAATTGGTAACAGACAGTGCAACTGTCTCTATGGAGTTGGAGAGATAACAGACAACATGATCTGTGCTGGTCTACTGGAGGGAGGCAAGGACTCATGTCAGGTACACAAACCCTGTTCAACTTGTGTTTACAAGGGAGATTCAGGAGGTCCGATGGAACTCCAGATAACTGACCCCATATATTTCCTCAGTCCACCAGCTGTTTCTGCATTTTAACCATTACCTATTTTCTTGATATTTGTATTATATTTACATATATTTGCAACTGTGTTAAGTCAAGCCAACAATTAACTTGATATGATTAGTGGAAAACATTTTGCCTGAATCCAATTTCTAAAAACTCTGACAAAAAACACATATAGAAACAAAGGGAATATAAAAACTGAAATTCGCAGTCGCCATGGATAAAAGGCATTTATAATTAAAGGTTCCAATCTTATTCATTTGTTCAGTCTTGTCAGATATAGAATGCTACAACGACACAAAGGCCCTTTAAGCTTTTGTGAACTAAATTTAATATTGAAGTACTGGTATTAAAGGAAATATTAATGTTGCAAAAGGAAATCTTTTAAGTCACCTTGGAGCACTTGATAAATTAATACATATAATGATGAAAATTAGCAATTATGACTATGCTATTTCTAGTGTTTCATTTAGGGATGTTTTGTATAATTTTCATCTCCTGGGTTTAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230556 lncRNA downstream 164814 4219397 ~ 4219733 (-) True G203143
TU230386 lncRNA downstream 207777 4130712 ~ 4176770 (-) True G202991
TU230392 lncRNA downstream 289655 4094355 ~ 4094892 (-) True G202997
TU230493 lncRNA downstream 290926 4093419 ~ 4093621 (-) True G203085
TU230492 lncRNA downstream 291136 4093178 ~ 4093411 (-) True G203084
TU230606 lncRNA upstream 10612 4408473 ~ 4408765 (-) False G203189
TU230605 lncRNA upstream 10680 4408541 ~ 4408765 (-) False G203189
TU230607 lncRNA upstream 10680 4408541 ~ 4408827 (-) True G203189
TU230610 lncRNA upstream 22298 4420159 ~ 4425359 (-) True G203191
TU230623 lncRNA upstream 104344 4502205 ~ 4502522 (-) True G203204
CI01000047_04345335_04375341.mRNA mRNA downstream 9113 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04289186_04338565.mRNA mRNA downstream 44777 4289063 ~ 4339770 (-) True CI01000047_04289186_04338565
CI01000047_04285605_04286644.mRNA mRNA downstream 97853 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
CI01000047_04213574_04213976.mRNA mRNA downstream 170571 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04137872_04142531.mRNA mRNA downstream 242016 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04398951_04431817.mRNA mRNA upstream 1090 4398951 ~ 4431817 (-) True CI01000047_04398951_04431817
CI01000047_04458864_04461672.mRNA mRNA upstream 60910 4458771 ~ 4462094 (-) True CI01000047_04458864_04461672
CI01000047_04479638_04501854.mRNA mRNA upstream 81380 4479241 ~ 4501973 (-) True CI01000047_04479638_04501854
CI01000047_04555399_04568166.mRNA mRNA upstream 156961 4554822 ~ 4568320 (-) True CI01000047_04555399_04568166
CI01000047_04575184_04576337.mRNA mRNA upstream 177130 4574991 ~ 4576337 (-) False CI01000047_04575184_04576337
TU230539 other downstream 97866 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 170117 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 398145 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1250895 3132313 ~ 3133652 (-) False G202733
TU230543 other upstream 176474 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 476518 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1520647 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1645392 6043253 ~ 6043789 (-) True G203881

Expression Profile