RNA id: CI01000047_04458864_04461672.mRNA


Basic Information

Item Value
RNA id CI01000047_04458864_04461672.mRNA
length 1730
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000047_04458864_04461672
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4458771 ~ 4462094 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATCAAGAATGAACTCTGATGAGAAACCAGCTGTAGATTTCACTGCGGGCCCATTTGTGACTAGACACAATCCAACTGCTGAAATAACATTTATACTCAGTTCAATGTATATTTCAGATGATGATGAAAAAGTGATGATGATGATGATGATGATGAAAGCTGTGTATTGAATGTGAATGTGGTACGAAAAATGCAAACAGAAATTGCTAAAATCAAAGTGGATTTATTGGCCCTTAGTTCAAAAGTATAATCAGTTGAACATGATTTTAAACAGTCGATAGAAAGTTCATTTTAATCAGGAAAGTTCATTAGTTTCCATGAGGCAGTGGACACTGGCTTAGCAGACTTAGAAGAGTATTTCCAAAGATCACTAGATAAGTGGACTGTTTTCTGAGTAGAGATGCAAGATGGGAAAGTCAAATGAAAAACCTTCAATTCACCAGTACCCCTTCTATTTCTAGATTACAGCCCTACACTCCAGTTACCTCTATTTCATCCTTTCACGATCTTAGAACTCTGATGCCAGCAGCTAGAGTTAAATTCCCCCCATACAAGACAGTCAATGCTACATTTGATATCTCTCCTGTAACTACTCCACTAACTAATGTGCTTAACCTTCTGGTTGTTCCAAGCACCTTGTCCTTCTGCGAGCAGCACCCAATTCATCTGGAGATTCCCACCTTTGGTGACTCCTGTAAGACTTCAGATATGCTCAACTATATTAAACAATGTGAAAACTATGTGGAAATCAGGCCCCTTCCCAAGATTTTTCCTATGACTTCCTGGGCCCTCTGCCTTAAGTGGAAGCCTGATATTACAGAGGACGAGTTGGTGAGCCGCATTCTTAACAACCTTGGCACAAGGGTTGCAGGCTGCCTGAGAGGGACTGTGAAAACAGTGGAACAGCTGGTGAAAGTTGGCTCTATGGGGGAGAAAGACTGTATGGGGAGACAGCTAGGAGGTGAGGCTTCATCTAGCACATCAGTTTCCCATCAAGGATTCATCATGGATGATGGAAAAGTTTACCAAGCTATTAACCAGAAAACAATCGCGTTGCGCAGTTCAGATGAGAGATGCAGAGCTACTGAGAAATCTGATCTGACATTAAGTGAGTTAATACCCGCTACATCTGCGTGGACTATACTTGATGCATATCTAATGCCGCTTATACATGATATCTTGGAATACATGGATGGCGCCACCTGGTTCAGCACATTGGATTTGCAGTCAGGATACTGTCAGGTGGAAATGGAGGAAGGTAGTAAAGAGAAAACAGCCTTCATCACCAACAAGGGGCTATTCGAATTCCGCTCCAGGCCGTATGGGCTCAGGAATGCCACAGCCACCTTCCAGAGGCTTATGGAGAAGGTCTTGGAAGAACTGAGAGGCAAATTATGCTTTGTTTACATAGATGACATCATCATCTATTCATGGTTATTAGAGGAACACATACAACACCTGAATACTATTATGCAAAGACTCAACCAGGCATATCTCACCCTTAACATGAAAAGGTGTCACTTCTTTAAATGGCAGTTAAAGTTTCTTGGTCACATCATCTCTGTGAAAGAAGTGGAGGTAAAGCCCCAAAAGCACCCAGGTGGTTGCCCAGTATTCTCGTCCCAAAGACATTAAAGCCCTCCAACGCTTCTTGGGACTAGCAGGATTGTACCACAAATTCATTCCCCATTTTGCCGACATTACTGCTCCCTTAAATCACCTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230610 lncRNA downstream 33412 4420159 ~ 4425359 (-) True G203191
TU230607 lncRNA downstream 49944 4408541 ~ 4408827 (-) True G203189
TU230606 lncRNA downstream 50006 4408473 ~ 4408765 (-) False G203189
TU230605 lncRNA downstream 50006 4408541 ~ 4408765 (-) False G203189
TU230556 lncRNA downstream 239038 4219397 ~ 4219733 (-) True G203143
TU230623 lncRNA upstream 40111 4502205 ~ 4502522 (-) True G203204
TU230636 lncRNA upstream 74247 4536341 ~ 4536570 (-) True G203217
TU230641 lncRNA upstream 83475 4545569 ~ 4546132 (-) False G203219
TU230638 lncRNA upstream 83642 4545736 ~ 4546132 (-) False G203219
TU230642 lncRNA upstream 83642 4545736 ~ 4546216 (-) False G203219
CI01000047_04398951_04431817.mRNA mRNA downstream 26954 4398951 ~ 4431817 (-) True CI01000047_04398951_04431817
CI01000047_04385029_04397861.mRNA mRNA downstream 60910 4384547 ~ 4397861 (-) True CI01000047_04385029_04397861
CI01000047_04345335_04375341.mRNA mRNA downstream 83337 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04289186_04338565.mRNA mRNA downstream 119001 4289063 ~ 4339770 (-) True CI01000047_04289186_04338565
CI01000047_04285605_04286644.mRNA mRNA downstream 172077 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
CI01000047_04479638_04501854.mRNA mRNA upstream 17147 4479241 ~ 4501973 (-) True CI01000047_04479638_04501854
CI01000047_04555399_04568166.mRNA mRNA upstream 92728 4554822 ~ 4568320 (-) True CI01000047_04555399_04568166
CI01000047_04575184_04576337.mRNA mRNA upstream 112897 4574991 ~ 4576337 (-) False CI01000047_04575184_04576337
CI01000047_04589853_04594533.mRNA mRNA upstream 127676 4589770 ~ 4594636 (-) True CI01000047_04589853_04594533
CI01000047_04596548_04605172.mRNA mRNA upstream 133886 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
TU230539 other downstream 172090 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 244341 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 472369 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1325119 3132313 ~ 3133652 (-) False G202733
TU230543 other upstream 112241 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 412285 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1456414 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1581159 6043253 ~ 6043789 (-) True G203881

Expression Profile