RNA id: CI01000047_04613815_04652751.mRNA


Basic Information

Item Value
RNA id CI01000047_04613815_04652751.mRNA
length 5046
RNA type mRNA
GC content 0.55
exon number 21
gene id CI01000047_04613815_04652751
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4613815 ~ 4652751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAATCTTGACAGCGCCTCTCCTCTTTTCCCAGCCACCCTGACCAATTACTCCGAGCCGGTGGACAGGAGCGGGAAACACGGCGATGGCTCTCGAGGAAGCAGCCTGAAGCTCTGGCACTCGCACAGATCCACTCTGGACTCCAGCCTGTACCGTGTGGACGAGAACATGGCCGCCTCCACCTATAGCCTCAACAAGATCCCTGAGCCCAGCTCCGCCCACTATTCCTCTCACCCCACCCCTCTCTACCTCATGCCCCGCCCTAACTCGGTGGCAGCCACCAGTTCGGCCCACCTGGAGGACTTGGCCTACTTGGATGAGCAGAGACACACCCCCCTGCGCACCTCCCTGCGGATGCCCCGACAAAACACGTCCGCGGGCCGCTCCGGGCAGGACCTGCGAGTGCGATTCGCTCCGTACAGACTGCAGGACATCGCACTAAAGCCGCTGCTTTTCGAGGTGCCCAGCATCACCATGGACTCTGTGTTTACTGGCCGTGATTGGCTCTTCCAGGAGATTGACGCCTACCTACGCACCGCCCACTCCGGCACGAATCGTGGCGTAGTTCTAGTGGGCAACATCGGCTATGGCAAGACGGCCATCATCTCACGCCTTGTGGCTCTCAGCTGCCATGGCAACCGCATGCGACAGATCGCCTCTGACAGCCCACAGGCGTCGCCAAAACATGGAGATGGCATCCCTCTCACACAGTCACAGCCTTCCCATGGTACACTGGGAGGAGGAAGTTGCCCTGGAACTCCAGAAATGAGGAGGAGACAGGAGGAGGCCATGAGGAGGCTTGCGTCACAGGTCGTGGCGTATCACTACTGTCAAGCAGATAACGCCTACACCTGCCTGGTGCCGGAGTTTGTGCACAACGTGGCGGCACTGCTGTGTCGCTCGCCACAACTCGCCGCGTACAGAGAGCTGCTGCTGAAAGAGCCGCACATACAGAGCATGCTCAGTCTGCGGTCCTGCGTCCAAGATCCGCCCACTGCCTTCAGACGAGGGAGGAAGATCACTCCGGATGAAGACCTCATCATTCTCATTGATGGTCTGAATGAGGCTGAGTTTCACAAACCAGACTATGGAGACACGATTGTGTCTTTCCTCTGTAAGACCATCAACAAGTTTCCAGCCTGGCTCAAACTGGTGGTGACTGTCAGGACCTCCCTGCAGGAAATCACCAAACCTCTCCCCTTCCACCAAATCTCTCTGGACGCCCTGGAGGAAAATGACGCCATTGACCACGATCTCCAGGGCTACATCCTCCACCGCATCCACAGCAGTGCAGAGATCCAAAACAACATCTCCCTCAATGGCAAGATGGACAACACCAGCTTCGGCAAGCTCAGTTCCCACCTCAAAGCCCTCAGCCAGGGCTCTTTTCTTTACCTGAAGCTCACCTTTGACCTGATCGAACGCGGCTACCTGGTGCTCAAAAGCTCCAACTACAAGGTGGTCCCGGTCAGTCTAGCTGAAGTGTACCTTCTGCAGTGTAACATGCGCTTCCCGACACAGTCATCCTTCGAAAGGGCCCTGCCGCTGCTGAACGTGGCCCTGGCTTCCCTGCACCCGCTTACCGATGAGCAAATCTACCAAGCCATCAACGCTGGCTCAGTGGAGGGCACTCTGGAGTGGGAAGACTTCCAGCAGAGGATGGAGAACCTGTCTGTGTTTCTGGTGAAGAGACGGGATGGAACACGCATGTTTGTGCACCCGTCCTTTAGAGAATGGCTCATATGGCGGGAGGAGGGAGAGAAGACCAAGTTCCTCTGTGATCCCAGGAATGGCCATACTCTTCTGGCTTTCTGGTTCTCCAGACAACAAAACAAACTAAATAGACAGCAGACCATCGAACTGGGTCACCACATACTGAAAGCACACATATTCAAGGTAAGAGTGTTATGCAAGTATGTGATAATAGATAACCATAATGCTCATATTTTACAGGTGTCACGGCTGCTGATATTGGGCGGCGCTAATGTGAACTACCGTACGGAGGTGTTGAACAACGCTCCGGTGCTGTGTGTGCACGCTCACCTGGGCTACATGGACATGGTGAACCTGCTGCTGGAATATGGTGCCAGTGTGGACTCGGCATCTGAGAGCGGCCTCACTCCTCTGGGCTACGCTGCCGCCGCTGGACACCTGGGGATAGTTACTGCCCTCTGCAAGAGGAAAGCAAAGCTCGACCACTCGGACAAGCACGGTCAGTGTGCCCTAGTGCACGCTGCTCTTAGAGGGCACCTGGAGGTGGTGAAGTTCCTCATTCAGAACGCTCAGACTCAGCAGCAGACATCGTCACAGCCTGTGACCTTCAACAAGAGCCTCGCAGTACAGCAGGCCCTTATAGCGGCAGCGAGCATGGGTTACACCGAGGTAACGGCCTGCTGGTGTCACATAATTCTTTGCATGCTTTTTGCTCCTATAGCTACTAATTTTGTCTGTGTCTTTAAGATTGTATCTTATCTCTTGGACTTGCCTGAGAGGGATGAAGAGGACACTCAACGCGCCCAGATTAACAGCTATGATACCCTGTGGGGTGAGACAGCACTGTCAGCAGCGGCAGGGCGGGGAAAGCTGGATGTTTGTCGGCTGCTATTGGAGCAGGGCTCTGCTGTGGCGCAGCCCAATCGGAGAGGGGTGGTGCCACTCTTCAGCTCTGTGCGTCAAGGGCACTGGCAGATTGTGGATCTGTTGGTATTGCATGGAGCAGACGTAAACCTGGCTGATAAACAAGGCCGTACTCCGCTCATGATGGCCGCCTCAGAAGGGCACCTGGACACGGTGGAGTTCCTAATGGCTCAGGGTGCGTCTATAGATCTTATGGATAAGGAGGGTCTCACTGCGCTCAGCTGGGCATGTTTGAAAGGACATCTGTCTGTGGTTCATTGCTTGGTGGAAAGGGGTGCCGCAACAGACCATGCTGATAAAAACGGACGGACGCCTCTCGATCTGGCCGCCTTCTATGGAGACTCAGAAGTGGTGCAGTTCCTGGTGGATCATGGGGCTTTGATAGAGCATGTGGATTACAGTGGAATGCGTCCTCTGGACCGGGCAGTTGGCTGCAGAAACACGTCAGTGGTGGTCGCCCTGCTGAAGAAAGGAGCCAAAATCGGTCCTGCTACCTGGGCAATGGCGACGTCTAAACCTGACATCATGATTATCCTACTGAGTAAACTTTTAGAGGAAGGAGATGGTTTCTACAAGAAAGGTAAAGTGAAGGAGGCAGCTCAGCGCTACCAGTATGCTCTGAAGAAATTTCCCCGTGAAGGATTAAGCGAGGACCTGAAGACCTTTAAAGAGCTCAAGGTGTCTTTGTTCCTGAACTTGTCTCGCTGTCGGAGGAAAATGAATGACTTTGGTATGGCGGAAGAGTTTGCTACCAAGGCTCTGGAACTGAAGCCTAAGTCTTATGAGGCATACTATGCTAGAGCCCGTGCCAAACGTAGCAGCAGGCAATTCGATGAAGCACTAGACGACCTGAGGGAAGCCATAAAGCTGTGTCCCAACAATCGTGAAATCCAGCGCCTCCTTCAGCGTGTGGAGGAGGAGTACAGGCAAGTTACCCAATCAGAGGAGCCAGAGCTTGAACCTCCTCCATCTCCACCACCATCTCCTTTACCAGTGGAGGAAGATGAGGAGCCCCCTCATCATACCCCTCCCCCTGAGCCAAGACTGGATGACATGGAACCTGTTCAAGATTTGTTTGAGGATGACGACTTCCTGGAACAAGAGCTAGAAGCCTCTGGCTCTCCAGTCCGCTACCAGCAGGAGCCTTTACCTAGCCGCCCTAAATCGCCACTGTTGAAGATGAGCAGCCAGCGATCCTTCCAGCTCCAGTCGCAACCTTCCCAGAGCTCTCAGACCAGCCAGCACCACCAGATTCAGGGTCTTCGCCTGCAGCCCTCTATGGCACAGATCGTCCGAACTAGCCAGCCCAGTAACAGTGTGTACAGCCAGTTGGCGCATCCACTCAGCAGCAGGTATCAGGGTAGTTCCATGGATGTGGACAGAGAGAGAGATCGGGAGCCGAGACTTGTGTACCAGCCCTCATTGGATGGCCGGTCAATGTCTCAAGTGCAATCCAGCCTTAGTGTGGGAGCTCTCTGTCAGCACGGGGGCAGAGGTGGGCCTGCCGGGGTTCTGGACCAAACCCCCCAGATTAGCCGCAGTCAGTCAGCGGCATACTATCCTGTCTCCAAGCATGAACTTGAGAGAGCAGTGGCCGCCTCTGCTCTGCCACCTTGCCAACTGGGCTCTCCGGAGATCCCCCACCTAGTACGCAGACCTATCAGTGCCAATACAAGTGACCTAAAGCAGCACGTACCGACCCCCAGACCACTGATCCACTCCCAGAGCGTAAATCTTCGCTTCTCCCCGTCTAGCAGTAATATCTCCTCAGGCTCCAGCTGCAATATAGGCCCTGGCTTCAGGCCCTCCTCCTCCATGGCCCAAATGGAAATCCCGTTACAGACCACATATGAGCGAAGCTTTGATGAGCCATCTGCCCTCTCACCCTCTCAGAGCGGACTCTACTCGGGCGAACCCGCCCGATCCCGGACCACTCCGTTTATGGGCGTCATCGACAAGACCGCAAGGACTCAGCAACAGTACCTTCACCAGCCTTCCCGGGCCTGGCCCGTTTCATCCCTGGAATCGGTAATCACTAGCCCCACGTCGCCTGGCAACTTGATCCACCAAGCCTCCACCGCCTCTTCCTACAGCCCACCTACATCTCTAGGCAATATTGCCTACTACAATAAGACCAATAATGCCCAGAATGGACACATGCTAGAGGATGAGTACTACGTCCAGCCGCAGCCCTCCTCCCTGGGCAAGCTTGCTAACGGAGGGGCCCGTGATCGAGACCTCCTGGAGCGGGTGAGCCAGGTGCCGACTTACCAGGATGTTAAAGTGGCACGGACAATGCCCGTGGCGCAGGCCTACCAGGAGAACATGTACCGCCAGCTTTCCCGTGATGCCAGACAAGGTCCCACCTCGCCCATCAAACCAAAGAGACCCTTTGTGGAGTCAAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230644 lncRNA downstream 63558 4550020 ~ 4550257 (-) True G203221
TU230642 lncRNA downstream 67599 4545736 ~ 4546216 (-) False G203219
TU230640 lncRNA downstream 67599 4545933 ~ 4546216 (-) True G203219
TU230638 lncRNA downstream 67683 4545736 ~ 4546132 (-) False G203219
TU230686 lncRNA upstream 149146 4801897 ~ 4802226 (-) True G203258
TU230732 lncRNA upstream 229902 4882653 ~ 4882903 (-) True G203298
TU230758 lncRNA upstream 282755 4935506 ~ 4948267 (-) True G203323
TU230737 lncRNA upstream 321545 4974296 ~ 4978735 (-) True G203303
TU230792 lncRNA upstream 336406 4989157 ~ 4989456 (-) True G203355
CI01000047_04596548_04605172.mRNA mRNA downstream 8643 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
CI01000047_04589853_04594533.mRNA mRNA downstream 19179 4589770 ~ 4594636 (-) True CI01000047_04589853_04594533
CI01000047_04575184_04576337.mRNA mRNA downstream 37478 4574991 ~ 4576337 (-) False CI01000047_04575184_04576337
CI01000047_04555399_04568166.mRNA mRNA downstream 45495 4554822 ~ 4568320 (-) True CI01000047_04555399_04568166
CI01000047_04479638_04501854.mRNA mRNA downstream 111842 4479241 ~ 4501973 (-) True CI01000047_04479638_04501854
CI01000047_04703391_04706693.mRNA mRNA upstream 50287 4703038 ~ 4706693 (-) True CI01000047_04703391_04706693
CI01000047_04790377_04795864.mRNA mRNA upstream 137473 4790224 ~ 4796316 (-) True CI01000047_04790377_04795864
CI01000047_04840115_04844233.mRNA mRNA upstream 186812 4839563 ~ 4844233 (-) True CI01000047_04840115_04844233
CI01000047_05108733_05109209.mRNA mRNA upstream 455253 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05151314_05157285.mRNA mRNA upstream 496968 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
TU230543 other downstream 36850 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 327134 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 399385 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 627413 3985342 ~ 3986402 (-) True G202944
TU230052 other downstream 1480163 3132313 ~ 3133652 (-) True G202733
TU230719 other upstream 221628 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1265757 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1390502 6043253 ~ 6043789 (-) True G203881

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009885 False 6231 mRNA 0.55 27 NC_007123.7 3314504 ~ 3453589 (-)
bowfin (Amia calva) AMCG00016865 True 5937 mRNA 0.63 27 CM030122.1 32810085 ~ 32856301 (+)