RNA id: CI01000047_04663268_04663847.mRNA



Basic Information


Item Value
RNA id CI01000047_04663268_04663847.mRNA
length 1492
RNA type mRNA
GC content 0.35
exon number 2
gene id CI01000047_04663268_04663847
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4662315 ~ 4663996 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAAACGCTTAAAAAAGGTGATTCGTTTCATTAATAGGAACCACGATTTCAACCAAACAGGCTTTTTTGCTGTTCAAAATGTTTACTGAAGAACTGAAGAAAGGATGATATTTAACAATCTGTGTTAAGATGCATCAATATAACAATAAGTAGTAATAAAAACATTTATTTGCACACTTCTTTTTTTTAACATTTTTAACAAATAGTATATTGTAATATTTTACATATTATACATATATTAACTTGTTATATATATTTTGGGTCTTTTATTATAATAATAAAATACTTTTATTCAGCAAGGACACATTAAATTGATCAAAAGTGGCATTTCTAATGTCTATTTCAAATAAATGCTGTTCTTCTGAACTTTCTATTCAGCAAAGAATCTACAACAAAAAAATATATCACAAAAAATATATCATGGCTTCCACAAAAATATGAAGCAGCACAACTGTTATCAACATTGATCATAATCAGAAATCAGCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTCATTCAGTGTCTGAAAATTCAGCTTTGGAATAGGAATAAATTACATTTTACAATATATTCATATAGAAAACATCGATTTTTAATTTGTAATAATATTTCACAATTTTACTGTTTTTACTGTATTTTTAAATCTTACGAAATGTCTTTTAAAAGCTTTTTTCAAAAAAATTACTAAACGAAGACTACACAGAAATTTCTGTGAACATTTTCAGCGTTTTCAATTTACTGAAACTGAATTTGAACTGAAACAGACAATGAAAGATTGCGAAAACTATTAAATGATCAGGATGTGAATATAGATATGTAAATATTGAGCACAGTACTGGCGCTCGTGATCATGTGAACTGATCCAGAGATGTGATGATCAAACGAGTGATCATTCAACACACGCAGTGGCGTTTCACATTAAGCAATTCGCTGAAATGACCCACATAGGCATGCAGATGGGAGAAGAAAGCATAAAGCACTTCCTTGTCCTCCTCCTCCTCCCCCTCCGTCCTGTCATCCTTGCATTCCTGTGCTACGGAGAAGACAGATGGTTGCTATGGCAACAGGCCGTGCGAGAGTCACGGCAGGTAGTGAAGGAGCAAACTGAGCAGCATCCTAAACAACAGCGCGCCTCTGATGACAGAGAGATGGAGGGAGATGGAAGAGAACAGAGTCTCAGTACAGACCAGCTGACTCACGGGCGCAAAGATTCCACTCATTACTCATCTCACACACACAGTGCAGATGCGCCAGAAGAGAACTGTGGCGGGACAACATCTGCAAAGGTCGCGCAACGCCACCATCAAAAAGCAACATGCACATGAATCTTCAACCTTTTCATCCGGTTGAATTTTAAATGCAACTTCCCAAAAAAAATGACAACACAAAAAAAGAGATTATGAAAATGCCGAAGCTGCTCTATTTTACAAACAACAATAATGAACATCAGGTCGAGACACGATTGCTTGGTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU228856 lncRNA upstream 38806 4619951 ~ 4623509 (+) True G201658
TU228791 lncRNA upstream 58654 4600298 ~ 4603661 (+) True G201605
TU228786 lncRNA upstream 65685 4573368 ~ 4596630 (+) True G201600
TU228793 lncRNA upstream 85375 4574335 ~ 4576940 (+) True G201607
TU228833 lncRNA upstream 114860 4547252 ~ 4547455 (+) True G201642
TU228883 lncRNA downstream 20335 4684331 ~ 4685358 (+) True G201684
TU228897 lncRNA downstream 68330 4732326 ~ 4733589 (+) True G201698
TU228977 lncRNA downstream 123938 4787934 ~ 4788563 (+) True G201773
TU229003 lncRNA downstream 247290 4911286 ~ 4912745 (+) True G201799
TU228924 lncRNA downstream 283634 4947630 ~ 4961291 (+) True G201722
CI01000047_04606043_04610846.mRNA mRNA upstream 50993 4606043 ~ 4611322 (+) True CI01000047_04606043_04610846
CI01000047_04582184_04586359.mRNA mRNA upstream 75519 4582004 ~ 4586796 (+) True CI01000047_04582184_04586359
CI01000047_04471595_04476690.mRNA mRNA upstream 185098 4471125 ~ 4477217 (+) True CI01000047_04471595_04476690
CI01000047_04222867_04253291.mRNA mRNA upstream 408604 4222682 ~ 4253711 (+) True CI01000047_04222867_04253291
CI01000047_04214987_04217836.mRNA mRNA upstream 443838 4214987 ~ 4218477 (+) True CI01000047_04214987_04217836
CI01000047_04678392_04690824.mRNA mRNA downstream 13996 4677992 ~ 4691097 (+) True CI01000047_04678392_04690824
CI01000047_04826817_04834995.mRNA mRNA downstream 162821 4826817 ~ 4835216 (+) True CI01000047_04826817_04834995
CI01000047_04845691_04876128.mRNA mRNA downstream 181695 4845691 ~ 4876128 (+) True CI01000047_04845691_04876128
CI01000047_04890965_04891981.mRNA mRNA downstream 226969 4890965 ~ 4892131 (+) True CI01000047_04890965_04891981
CI01000047_05058628_05074146.mRNA mRNA downstream 394347 5058343 ~ 5074374 (+) True CI01000047_05058628_05074146
TU228781 other upstream 179858 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 960455 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1574128 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 2084318 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2343353 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 2151721 6815717 ~ 6816118 (+) True G202382

Expression Profile