RNA id: CI01000047_04840115_04844233.mRNA


Basic Information

Item Value
RNA id CI01000047_04840115_04844233.mRNA
length 1773
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000047_04840115_04844233
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4839563 ~ 4844233 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCCAAGGAGCCGGATAAAACTAGTTCTGGGACAGAAAGCTCTTTTATCGGCGATGCAGACTCTGATTCACCGTCCTCTCCATCAGTGTCCGACGAACAAGGGTCGCAAACCGGCACCGGCAACCGGGCAGACAGCGAGGAAGACGCCCGTTTCCCCCCGTGCATCCGAGATGCCGTGTCGCAGGTTCTCAAAGGCTACGACTGGTCCCTGGTGCCGATGCCTATGCAGGGTAGCAGGTCTTTGAAAGACAAGCCTCACGTGAAGAGACCCATGAACGCGTTTATGGTGTGGGCGCAGGCTGCGCGCAGGAAGCTGGCGGATCAGTACCCGCATCTGCACAACGCCGAGCTCAGCAAGACCCTGGGCAAGTTATGGAGGCTGCTTTCTGAGAGCGAGAAGAAGCCGTTTGTGGAAGAGGCAGAGAGACTGCGACTCCAGCACAAGAAAGACTATCCGGATTATAAGTACCAGCCACGGAGACGGAAGAGCCTGAAGCCGGGTCAGAGTGAACTGGACGCGGGAGCTGAGAAGATCCATCATCCCTCGGATCAAATGTACAAGACGGAAGCGGGAATGAGAGGGATGCACAATCAACCGGTCCATGGTGTTCAAGCACACGGCCCTCCAACGCCTCCAACCACCCCGAAGTCCGATCAGCATCAAAGCGCGAAGCGTGCCACGGAAAACGCAAGACAGAACATCGACTTTAGCAACGTGGACATAACGGAGCTCAGCAGCGACGTCATCGGCAGCATGGGCCCGTTCGACGTGCGTGAGTTCGACCAGTACCTGCCGTTAAACGGCCACATCGAGAACAACGGCGGGCAGCACTCCAGCCCCGGCTGTTTCAGCGCGTCCTATCACCATCACGGCAGCGTTTCGGCATGGAACAAGGCGTCCGGGTCACCGTCCACATCCTCGCATAACCAGTCGAGCCAACAAAGGCCGCTCATTAAAACAGAACAATTGAGTCCTTCTCATTACGCAGAGTCTCACGGGTCGCCGACCCAATCTGAACTGAGTGACTGTCCTGACATGCAGAACTCGACGTACTTCACCACATTTTCTGGGTATCCCGCTGGCATTTATCAATATCCGTACTTCCATTCCTCCAGAAGATCATATGTGACTCCTGTTCTCAACAGTTTGTCCAGTCCGTCTCATAGTCCCGGTGCAAACTGGGAGCAACCGGTTTACACGACTTTAACGCGCCCCTGATGCCATCATGAGAATTATGGGACTATGTGGTGTATGAAGACATTTGCTGATACTTTAAGATGTTTTATCTTGCCATTTCTGGTAATTTTGACCTTTAGATTTTCTGGAAACACTTTACAAAGGTCTCATTTGTTAACATTAGTTAATGCATTAGCTAACATCTTTGTTAAATTTAGTTAGTAAAATCGAATTGTTCATTGTTTGTTCGTGTTAGTTCACAGTGCATTAACAAATGTTAACAAATACAACTTTAGATTTTAAATCACCAGTGACTAATGCTTTAGAAGTATTTTCATTGTCAGTTCATGTTAACTAATGTAGTTAACTAATGTTAACAAATGCAACCTTATTGTAAAGTGTTACTGATTTTCCTAACGATTTTTGGGCTCACTTTTCAATATTGAATGTTTTGTGTTTATACTATGGTCCGGATAAAAGTGTTTTTGTTTTGTTTTTTGGGGGGGGAGTGAGACGCAATAGACTGATTTCTCTCGTCAATATTCAGTACGCTATTTAAATGCAATCATGTCTTTTTTGCTAAATGCAATTAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230686 lncRNA downstream 37337 4801897 ~ 4802226 (-) True G203258
TU230644 lncRNA downstream 289306 4550020 ~ 4550257 (-) True G203221
TU230642 lncRNA downstream 293347 4545736 ~ 4546216 (-) False G203219
TU230640 lncRNA downstream 293347 4545933 ~ 4546216 (-) True G203219
TU230638 lncRNA downstream 293431 4545736 ~ 4546132 (-) False G203219
TU230732 lncRNA upstream 38420 4882653 ~ 4882903 (-) True G203298
TU230758 lncRNA upstream 91273 4935506 ~ 4948267 (-) True G203323
TU230737 lncRNA upstream 130063 4974296 ~ 4978735 (-) True G203303
TU230792 lncRNA upstream 144924 4989157 ~ 4989456 (-) True G203355
TU230793 lncRNA upstream 146527 4990760 ~ 4990990 (-) True G203356
CI01000047_04790377_04795864.mRNA mRNA downstream 43247 4790224 ~ 4796316 (-) True CI01000047_04790377_04795864
CI01000047_04703391_04706693.mRNA mRNA downstream 132870 4703038 ~ 4706693 (-) True CI01000047_04703391_04706693
CI01000047_04613815_04652751.mRNA mRNA downstream 186812 4613815 ~ 4652751 (-) True CI01000047_04613815_04652751
CI01000047_04596548_04605172.mRNA mRNA downstream 234391 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
CI01000047_04589853_04594533.mRNA mRNA downstream 244927 4589770 ~ 4594636 (-) True CI01000047_04589853_04594533
CI01000047_05108733_05109209.mRNA mRNA upstream 263771 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05151314_05157285.mRNA mRNA upstream 305486 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05219313_05222967.mRNA mRNA upstream 374957 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05235089_05236228.mRNA mRNA upstream 389911 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05247473_05248489.mRNA mRNA upstream 402730 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
TU230543 other downstream 262598 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 552882 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 625133 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 853161 3985342 ~ 3986402 (-) True G202944
TU230052 other downstream 1705911 3132313 ~ 3133652 (-) True G202733
TU230719 other upstream 30146 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1074275 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1199020 6043253 ~ 6043789 (-) True G203881

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009853 True 1982 mRNA 0.48 4 NC_007123.7 1072486 ~ 1085227 (-)
bowfin (Amia calva) AMCG00018263 True 3233 mRNA 0.48 3 CM030135.1 5881546 ~ 5886000 (-)