RNA id: CI01000047_04890965_04891981.mRNA



Basic Information


Item Value
RNA id CI01000047_04890965_04891981.mRNA
length 339
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000047_04890965_04891981
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4890965 ~ 4892131 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTAATGCTGGTTGGTGACTCTGGGGTGGGGAAAACCTGTCTGTTGGTTCGCTTTAAAGATGGAGCATTTCTGGCTGGGAGCTTCATCTCAACAGTTGGTATAGACTTCAGGCTCTTCCATTACTTCAATACAGCCAAGGGCAATCTGGGCTCTTCACAAGCACAGTACTTTATCATTTATGTGAGCTAATCTAGAAGATTGGACAAAGTGTCTTTGTGTTCGGACTACTTTAGTCAATGTGAATCTGAAAGGCCTTCATTTAAGGTCTCTCTTTAGATGGACAGTGAAAATTGTGGCTGAACTTTTTAAAAATATTTCTAATCAAAAGTTGTGGTAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU228977 lncRNA upstream 102402 4787934 ~ 4788563 (+) True G201773
TU228897 lncRNA upstream 157376 4732326 ~ 4733589 (+) True G201698
TU228868 lncRNA upstream 166878 4648379 ~ 4724087 (+) True G201669
TU228883 lncRNA upstream 205607 4684331 ~ 4685358 (+) True G201684
TU228856 lncRNA upstream 267456 4619951 ~ 4623509 (+) True G201658
TU229003 lncRNA downstream 19155 4911286 ~ 4912745 (+) True G201799
TU228924 lncRNA downstream 55499 4947630 ~ 4961291 (+) True G201722
TU228930 lncRNA downstream 69314 4961445 ~ 4965850 (+) True G201728
TU229064 lncRNA downstream 180556 5072687 ~ 5073157 (+) True G201856
TU229052 lncRNA downstream 205454 5097585 ~ 5097981 (+) True G201847
CI01000047_04845691_04876128.mRNA mRNA upstream 14837 4845691 ~ 4876128 (+) True CI01000047_04845691_04876128
CI01000047_04826817_04834995.mRNA mRNA upstream 55749 4826817 ~ 4835216 (+) True CI01000047_04826817_04834995
CI01000047_04678392_04690824.mRNA mRNA upstream 199868 4677992 ~ 4691097 (+) True CI01000047_04678392_04690824
CI01000047_04663268_04663847.mRNA mRNA upstream 226969 4662315 ~ 4663996 (+) True CI01000047_04663268_04663847
CI01000047_04606043_04610846.mRNA mRNA upstream 279643 4606043 ~ 4611322 (+) True CI01000047_04606043_04610846
CI01000047_05058628_05074146.mRNA mRNA downstream 166212 5058343 ~ 5074374 (+) True CI01000047_05058628_05074146
CI01000047_05080583_05091592.mRNA mRNA downstream 187203 5079334 ~ 5091965 (+) True CI01000047_05080583_05091592
CI01000047_05104311_05105437.mRNA mRNA downstream 212070 5104201 ~ 5105897 (+) True CI01000047_05104311_05105437
CI01000047_05159134_05162486.mRNA mRNA downstream 265074 5157205 ~ 5162595 (+) True CI01000047_05159134_05162486
CI01000047_05185698_05212150.mRNA mRNA downstream 293567 5185698 ~ 5212224 (+) True CI01000047_05185698_05212150
TU228781 other upstream 408508 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 1189105 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1802778 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 2312968 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2572003 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 1923586 6815717 ~ 6816118 (+) True G202382

Expression Profile