RNA id: CI01000047_05080583_05091592.mRNA



Basic Information


Item Value
RNA id CI01000047_05080583_05091592.mRNA
length 1916
RNA type mRNA
GC content 0.35
exon number 4
gene id CI01000047_05080583_05091592
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5079334 ~ 5091965 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTACATAAGCAGAGCATAAATTTCCCACTTTCCGTCAGCTCTCCCCTGAAATCCCAGTTTGGCAATGTGCTAAAAGCCTGCGTCACGCAACCATGCCAGAAAAGTACTAAAACACACAATCACCTGCATAATAGAAGCAATAATGTGGATAGTCAGTACTAATGATTGGATTTTTAAAACAAATCTGAGTCGTCTGCAGTGTCCATGATCACAGTTTTATTAGTGAACACTCTGTACTGTGTTTATTTTCTGTGCTAATCATCCATCCACATGAAGATCGTGTTCTCCTGTTTGTACTTCGGCATTCACATGCATTAGTGAAAAGAAACTTGCTACTTTCCATGAAATGTCAGATGAGAGTGCCTCTTACAGCCCACGTGTAATGAAGGTGCCATCACACACACTTTTACATCCTAATGCTTTTAAATAATTATGTTGGGAGAAACAGTTTATTTACTGGTTGTTATCAAACATTGATGTTTTTGACACACCTGCCAATGCTAGGTGAATTCAGAAAATGTATGGATCATTCATATTTCATTCGTGGCCATAACATTTTTATTTTCTAATGTTGTTGTCCTGAATTTTAATATTATTTTAGATCATATTTGGCTGTTATTATTACTAATTTTCAGGTTTTTAGCATGCATTCAATATATTAATTTATTTAAAAGTTTTTACTTGAATTTAACAGTTGTATTTGTATCTCTAATATTAACAAAATACTTTAATGTATTGCTCGCTGTTCATGTTTGTTAACGCATTAACTAACGTTAACTAATGGGACCTTGTTGTAAAATGTTATACACTATTTGATATTATTTTAGATAATATTTGACTATTACATCAACTAATATAATGCAAAAAAAAAAAAAAAAAATTTTGTTTTTTACTTCATCAAAATGATATGAACCTTTTTAACACTTGCCAATGCAAGCTGAATTCAGAAAATGTATGAATAATGTATATTTTTGATTGGCCATCAAATCTTACTTTTCATAATTTTATAATCATGCAATTGTGAATTTTAATAGTATTATTTGGCTGTATTTAATTATTAATTTTCAGGTTTTTAGCATGCATTCATTATATTAATTTATTTTAATTTATTTTTATCACCTTTCTCCACATTTCCCCTGATTTTCCTCACACTGATATACTGTAAATTTATACACCATCCATGAGGAATATAACTTTTGGAACAGCATTTGTCTTGAGTATTAGCATAAATGAACTAATAATCTGAAATATGGAGAGAAATATGCCAGCTGGCCTCTCAGTGGAGCGTGAGCGATGCAATCTGTGTCCACAGACCTTCGCTGAAAGCCCTGCAGATTTCTGTCAGGTTTCAGCAGCTGTCACTCACAACGTCCTGCTGGACATAATATATTCATCCCTTTCATACTCATTTTGGAATGCCAGTCCTATAGGGGTGGTCCTGACCGCAGTGGTGGGCGTGTCCTACACAATAGCTATTGCATATGAAGGACCATTCACTGAGGAGATCTATCGGCAGAGGAGCCAGCGCTGCAAGCACAAATAAAGACGGAGCGCGCTTGTGTAAAGATGACACCCAGATTCCCGATCCGCAGGAGCGCTGCTGACACTGCAAGCTCTTGGATAGAGATGGGTGGATACATAGCACATAGATCTTTAACACTACCGCAATGTTTAAACTTTTCTTTTAAATGCAAACTGTGAATGCAATGACAATCTTCAGTTGTAATCTGTAGTTTGCTCTTCATTGACATCACGTATCATAACCATAAATGGTTGTTTTTATTTCCTCAATCCATTCCTAATGCACGTCCAGGCTGAAAGCAGCTGTTTTAGGGTCCATTTGATTCATGTTCAGAGATTGAATGTACTTTGATCTGTTTTATGTGAGGATGCAGGTTTTTCTTTCCAAAGGTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU229064 lncRNA upstream 6177 5072687 ~ 5073157 (+) True G201856
TU228930 lncRNA upstream 113484 4961445 ~ 4965850 (+) True G201728
TU228924 lncRNA upstream 118043 4947630 ~ 4961291 (+) True G201722
TU229003 lncRNA upstream 166589 4911286 ~ 4912745 (+) True G201799
TU228977 lncRNA upstream 290771 4787934 ~ 4788563 (+) True G201773
TU229052 lncRNA downstream 5620 5097585 ~ 5097981 (+) True G201847
TU229053 lncRNA downstream 16559 5108524 ~ 5109175 (+) False G201848
TU229054 lncRNA downstream 16559 5108524 ~ 5109175 (+) True G201848
TU229072 lncRNA downstream 18023 5109988 ~ 5110202 (+) True G201863
TU229078 lncRNA downstream 27385 5119350 ~ 5119644 (+) True G201869
CI01000047_05058628_05074146.mRNA mRNA upstream 4960 5058343 ~ 5074374 (+) True CI01000047_05058628_05074146
CI01000047_04890965_04891981.mRNA mRNA upstream 187203 4890965 ~ 4892131 (+) True CI01000047_04890965_04891981
CI01000047_04845691_04876128.mRNA mRNA upstream 203206 4845691 ~ 4876128 (+) True CI01000047_04845691_04876128
CI01000047_04826817_04834995.mRNA mRNA upstream 244118 4826817 ~ 4835216 (+) True CI01000047_04826817_04834995
CI01000047_04678392_04690824.mRNA mRNA upstream 388237 4677992 ~ 4691097 (+) True CI01000047_04678392_04690824
CI01000047_05104311_05105437.mRNA mRNA downstream 12236 5104201 ~ 5105897 (+) True CI01000047_05104311_05105437
CI01000047_05159134_05162486.mRNA mRNA downstream 65240 5157205 ~ 5162595 (+) True CI01000047_05159134_05162486
CI01000047_05185698_05212150.mRNA mRNA downstream 93733 5185698 ~ 5212224 (+) True CI01000047_05185698_05212150
CI01000047_05267807_05269108.mRNA mRNA downstream 175842 5267807 ~ 5269150 (+) True CI01000047_05267807_05269108
CI01000047_05315990_05318854.mRNA mRNA downstream 223619 5315584 ~ 5320411 (+) True CI01000047_05315990_05318854
TU228781 other upstream 596877 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 1377474 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1991147 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 2501337 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2760372 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 1723752 6815717 ~ 6816118 (+) True G202382

Expression Profile