RNA id: CI01000047_05108733_05109209.mRNA


Basic Information

Item Value
RNA id CI01000047_05108733_05109209.mRNA
length 1073
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000047_05108733_05109209
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5108004 ~ 5109256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGACGCAGACGCACGTTGATGACGTACCAACCTCTCAGCGCAAACATGGCGACTACGGTACCGGTGGTAGAGGAGGCTGAAGATTATTCCTTTTTACCCATTATTCACGATGTAATAAAATGCATGGATAAGGAAAGTCCAGACGTACATCAGGAGCTGAACAAACTGAAGACGAAGATTCAGGAGGCTCGGGAGCAGATTTCAGCCATGCCGGGGATCGACATGAGTCCTGCGCTGCAGGAGAACAAACTGCAGACCCTCAGAGAGCAGGTCCGGACCAAGAACCAGCTTTTGCAGAAATACAAAAGCCTGTGCATGTTTGACATCCCCAAACCTTCATGAGAGAACGCATGAATGAAAACACGAACACTTGTTTACACCGGAAGAGGCGACACTGATTCAGCCACATGTTTTTTTTATTAGGCTATTTGTAATTTTTGTATATATATATTTTTTGTTTTTACTTTGTGCATAGCATTTGCAACATCATGTGTTTTGTGCCGGTGAATGGTTACTGTGTACTTCACCTTTGTCAGTTTGTGCATTAAACTCAGTCACTTATTCAATAGAGGTTTTTATTTGCACTTAAAAATGAAACCATATATTTACCAGACCTGAGACAATATTGTGGTCTTACTTAAACCGGATAAATGACTGAAATAACAAGCAATTTTGCTTGAAATCAACATAAGACAATTTTTAGAAGGTATAAATTCTGCATTTTTAAAGAATGCATCTGGAATATTTATACACAAGATGAGCTTTAACGGCAAGTTTAGATAAAACATTTGTTATAATTATTTATTTTTTAAAATATACTCAGATACAGTATTGGGGCCTCATTTCAAGCCATAATGCATTAGTTAATTACAAGCTGTGCTTGCTTGGTGTCAAGTGTGCTCAACATACAAATGACAATTGTTTGAGCATCATAGAAGGGATTTTGAGAAAATTCTGCCTTTTTTAAAGAATATGTCTGGAATATTTATCCTCAATGGACTTGCAGCAGGTAGATGAAATTATATTTTAATGTGCTCATATTGAGGCCTAATTTCAAGCAAGATGAATAAA

Function

GO:      GO:0001104, GO:0016592, GO:0006357

KEGG:

id description
K15149 MED9; mediator of RNA polymerase II transcription subunit 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230889 lncRNA downstream 8292 5099498 ~ 5099712 (-) True G203442
TU230884 lncRNA downstream 11323 5096086 ~ 5096681 (-) True G203437
TU230796 lncRNA downstream 103027 5004472 ~ 5004977 (-) True G203359
TU230793 lncRNA downstream 117014 4990760 ~ 4990990 (-) True G203356
TU230792 lncRNA downstream 118548 4989157 ~ 4989456 (-) True G203355
TU230894 lncRNA upstream 3110 5112366 ~ 5113194 (-) False G203446
TU230893 lncRNA upstream 3366 5112622 ~ 5113194 (-) True G203446
TU230876 lncRNA upstream 12670 5121926 ~ 5164869 (-) True G203429
TU230992 lncRNA upstream 186214 5295470 ~ 5317664 (-) False G203516
TU230993 lncRNA upstream 186214 5295470 ~ 5314304 (-) True G203516
CI01000047_04840115_04844233.mRNA mRNA downstream 263771 4839563 ~ 4844233 (-) True CI01000047_04840115_04844233
CI01000047_04790377_04795864.mRNA mRNA downstream 311688 4790224 ~ 4796316 (-) True CI01000047_04790377_04795864
CI01000047_04703391_04706693.mRNA mRNA downstream 401311 4703038 ~ 4706693 (-) True CI01000047_04703391_04706693
CI01000047_04613815_04652751.mRNA mRNA downstream 455253 4613815 ~ 4652751 (-) True CI01000047_04613815_04652751
CI01000047_04596548_04605172.mRNA mRNA downstream 502832 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
CI01000047_05151314_05157285.mRNA mRNA upstream 40463 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05219313_05222967.mRNA mRNA upstream 109934 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05235089_05236228.mRNA mRNA upstream 124888 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05247473_05248489.mRNA mRNA upstream 137707 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
CI01000047_05546059_05547988.mRNA mRNA upstream 435525 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
TU230719 other downstream 231270 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 531039 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 821323 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 893574 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1121602 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 809252 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 933997 6043253 ~ 6043789 (-) True G203881

Expression Profile